3HN4	Hormone	date	May 29, 2009
title	Crystal Structure Of The Nk2 Fragment (28-289) Of Human Hepa Growth Factorscatter Factor
authors	W.D.Tolbert
compound		source
Molecule: Hepatocyte Growth Factor Chain: A Fragment: Unp Residues 28-289 Synonym: Scatter Factor, Sf, Hepatopoeitin-A, Hepatocyte Gr Factor Alpha Chain, Hepatocyte Growth Factor Beta Chain; Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Hgf, Hpta Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Origami B(De) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet-Duet1trxdsbc
symmetry	Space Group: P 65 2 2	R_factor 0.263 R_Free 0.333
crystal cell	length a length b length c angle alpha angle beta angle gamma 48.150 48.150 461.673 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.60 Å
ligand	EPE, MPD, SO4	enzyme
Primary reference	Structural basis for agonism and antagonism of hepatocyte growth factor., Tolbert WD, Daugherty-Holtrop J, Gherardi E, Vande Woude G, Xu HE, Proc Natl Acad Sci U S A. 2010 Jul 27;107(30):13264-9. Epub 2010 Jul 12. PMID:20624990

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (50 Kb) [Save to disk] Biological Unit Coordinates (3hn4.pdb1.gz) 45 Kb LPC: Ligand-Protein Contacts for 3HN4 CSU: Contacts of Structural Units for 3HN4 Structure Factors (93 Kb) Retrieve 3HN4 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3HN4 from S2C, [Save to disk] Re-refined 3hn4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3HN4 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3HN4

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3HN4, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3hn4_A] [3hn4] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 3HN4: [KR] [PAN_AP ] by SMART

Other resources with information on 3HN4

Community annotation for 3HN4 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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