3HPD Transferase date Jun 04, 2009
title Structure Of Hydroxyethylthiazole Kinase Protein From Pyroco Horikoshii Ot3
authors J.Jeyakanthan, S.Thamotharan, S.Kuramitsu, S.Yokoyama, T.H.Tahir Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Hydroxyethylthiazole Kinase
Chain: A
Synonym: 4-Methyl-5-Beta-Hydroxyethylthiazole Kinase, Thz K Kinase;
Ec: 2.7.1.50
Engineered: Yes
Organism_scientific: Pyrococcus Horikoshii
Organism_taxid: 70601
Strain: Ot3
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21-Codon Plus(De3)-Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-11a
symmetry Space Group: I 2 3
R_factor 0.164 R_Free 0.184
crystal
cell
length a length b length c angle alpha angle beta angle gamma
112.242 112.242 112.242 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.85 Å
ligand PO4 enzyme Transferase E.C.2.7.1.50 BRENDA
note 3HPD supersedes 1V8A
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (48 Kb) [Save to disk]
  • Biological Unit Coordinates (3hpd.pdb1.gz) 127 Kb
  • LPC: Ligand-Protein Contacts for 3HPD
  • CSU: Contacts of Structural Units for 3HPD
  • Likely Quarternary Molecular Structure file(s) for 3HPD
  • Structure Factors (320 Kb)
  • Retrieve 3HPD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3HPD from S2C, [Save to disk]
  • Re-refined 3hpd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3HPD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3HPD
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3HPD, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3hpd_A] [3hpd]
  • SWISS-PROT database: [O58877]
  • Domain organization of [THIM_PYRHO] by SWISSPFAM
  • Other resources with information on 3HPD
  • Community annotation for 3HPD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science