3HQD Motor Protein date Jun 05, 2009
title Human Kinesin Eg5 Motor Domain In Complex With Amppnp And Mg
authors C.L.Parke, E.J.Wojcik, S.Kim, D.K.Worthylake
compound source
Molecule: Kinesin-Like Protein Kif11
Chain: A, B
Fragment: Motor Domain Of Human Kinesin Eg5 (Residues 1-369
Synonym: Kinesin-Related Motor Protein Eg5, Kinesin-Like Sp Protein Hksp, Thyroid Receptor-Interacting Protein 5, Trip- Kinesin-Like Protein 1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Eg5, Kif11, Knsl1, Trip5
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Rosetta
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a
symmetry Space Group: P 1 21 1
R_factor 0.224 R_Free 0.262
crystal
cell
length a length b length c angle alpha angle beta angle gamma
60.500 71.435 94.846 90.00 98.86 90.00
method X-Ray Diffractionresolution 2.19 Å
ligand ANP, MG, PO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceATP hydrolysis in Eg5 kinesin involves a catalytic two-water mechanism., Parke CL, Wojcik EJ, Kim S, Worthylake DK, J Biol Chem. 2010 Feb 19;285(8):5859-67. Epub 2009 Dec 15. PMID:20018897
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (121 Kb) [Save to disk]
  • Biological Unit Coordinates (3hqd.pdb1.gz) 61 Kb
  • Biological Unit Coordinates (3hqd.pdb2.gz) 58 Kb
  • LPC: Ligand-Protein Contacts for 3HQD
  • CSU: Contacts of Structural Units for 3HQD
  • Structure Factors (355 Kb)
  • Retrieve 3HQD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3HQD from S2C, [Save to disk]
  • Re-refined 3hqd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3HQD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3HQD
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3HQD, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3hqd_A] [3hqd_B] [3hqd]
  • SWISS-PROT database: [P52732]
  • Domain organization of [KIF11_HUMAN] by SWISSPFAM
  • Domain found in 3HQD: [KISc ] by SMART
  • Other resources with information on 3HQD
  • Community annotation for 3HQD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science