3HRB Transferase date Jun 09, 2009
title P38 Kinase Crystal Structure In Complex With Small Molecule
authors V.Segarra, W.Lumeras, B.Vidal, P.Leonard, M.Fisher, M.Lamers
compound source
Molecule: Mitogen-Activated Protein Kinase 14
Chain: A
Synonym: Mitogen-Activated Protein Kinase P38 Alpha, Map Ki Alpha, Cytokine Suppressive Anti-Inflammatory Drug-Binding Csaid-Binding Protein, Csbp, Max-Interacting Protein 2, Map Mxi2, Sapk2a;
Ec: 2.7.11.24
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mapk14, Csbp, Csbp1, Csbp2, Cspb1, Mxi2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Other_details: The Plasmid Used Is Annotated As Sareum Prop
symmetry Space Group: P 21 21 21
R_factor 0.214 R_Free 0.260
crystal
cell
length a length b length c angle alpha angle beta angle gamma
45.220 86.750 122.230 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand I39 BindingDB enzyme Transferase E.C.2.7.11.24 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDesign, Synthesis, and Structure-Activity Relationships of Aminopyridine N-Oxides, a Novel Scaffold for the Potent and Selective Inhibition of p38 Mitogen Activated Protein Kinase., Lumeras W, Caturla F, Vidal L, Esteve C, Balague C, Orellana A, Dominguez M, Roca R, Huerta JM, Godessart N, Vidal B, J Med Chem. 2009 Aug 14. PMID:19678708
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (63 Kb) [Save to disk]
  • Biological Unit Coordinates (3hrb.pdb1.gz) 59 Kb
  • LPC: Ligand-Protein Contacts for 3HRB
  • CSU: Contacts of Structural Units for 3HRB
  • Structure Factors (319 Kb)
  • Retrieve 3HRB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3HRB from S2C, [Save to disk]
  • Re-refined 3hrb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3HRB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3HRB
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3HRB, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3hrb] [3hrb_A]
  • SWISS-PROT database: [Q16539]
  • Domain organization of [MK14_HUMAN] by SWISSPFAM
  • Domain found in 3HRB: [S_TKc ] by SMART
  • Other resources with information on 3HRB
  • Community annotation for 3HRB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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