3HS3 Transcription Regulator date Jun 10, 2009
title Crystal Structure Of Periplasmic Binding Ribose Operon Repre Protein From Lactobacillus Acidophilus
authors R.Agarwal, S.K.Burley, S.Swaminathan, New York Sgx Research Cen Structural Genomics (Nysgxrc)
compound source
Molecule: Ribose Operon Repressor
Chain: A, B
Engineered: Yes
 Organism_scientific: Lactobacillus Acidophilus
Organism_taxid: 1579
Strain: Ncfm
Gene: Rbsr, Lba1472
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)Ripl
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Psgx3(Bc)
symmetry Space Group: P 21 21 21
R_factor 0.212 R_Free 0.234
crystal
cell
length a length b length c angle alpha angle beta angle gamma
59.597 70.224 139.439 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.60 Å
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (93 Kb) [Save to disk]
  • Biological Unit Coordinates (3hs3.pdb1.gz) 89 Kb
  • CSU: Contacts of Structural Units for 3HS3
  • Likely Quarternary Molecular Structure file(s) for 3HS3
  • Structure Factors (558 Kb)
  • Retrieve 3HS3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3HS3 from S2C, [Save to disk]
  • Re-refined 3hs3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3HS3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3HS3
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3HS3, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3hs3] [3hs3_A] [3hs3_B]
  • SWISS-PROT database: [Q5FJ32]
  • Domain organization of [Q5FJ32_LACAC] by SWISSPFAM
    • Other resources with information on 3HS3
  • Community annotation for 3HS3 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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