3HSA Crystal structure of pleckstrin homology domain (YP_926556.1) from SHEWANELLA AMAZONENSIS SB2B at 1.99 A resolution date
authors JCSG, Joint.Center.for.Structural.Genomics.
compound source
symmetry
R_factor
R_Free 0.233
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.99
ligand GOL, MLY, MSE, PEG enzyme
Gene SAMA ; YP
Primary referenceBacterial pleckstrin homology domains: a prokaryotic origin for the PH domain., Xu Q, Bateman A, Finn RD, Abdubek P, Astakhova T, Axelrod HL, Bakolitsa C, Carlton D, Chen C, Chiu HJ, Chiu M, Clayton T, Das D, Deller MC, Duan L, Ellrott K, Ernst D, Farr CL, Feuerhelm J, Grant JC, Grzechnik A, Han GW, Jaroszewski L, Jin KK, Klock HE, Knuth MW, Kozbial P, Krishna SS, Kumar A, Marciano D, McMullan D, Miller MD, Morse AT, Nigoghossian E, Nopakun A, Okach L, Puckett C, Reyes R, Rife CL, Sefcovic N, Tien HJ, Trame CB, van den Bedem H, Weekes D, Wooten T, Hodgson KO, Wooley J, Elsliger MA, Deacon AM, Godzik A, Lesley SA, Wilson IA, J Mol Biol. 2010 Feb 12;396(1):31-46. Epub 2009 Nov 10. PMID:19913036
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (112 Kb) [Save to disk]
  • Biological Unit Coordinates (3hsa.pdb1.gz) 101 Kb
  • LPC: Ligand-Protein Contacts for 3HSA
  • CSU: Contacts of Structural Units for 3HSA
  • Likely Quarternary Molecular Structure file(s) for 3HSA
  • Structure Factors (5014 Kb)
  • Retrieve 3HSA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3HSA from S2C, [Save to disk]
  • Re-refined 3hsa structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3HSA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3HSA
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3HSA, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3hsa_C] [3hsa_A] [3hsa_B] [3hsa] [3hsa_E] [3hsa_D]
  • SWISS-PROT database: [A1S3D0]
  • Domain organization of [A1S3D0_SHEAM] by SWISSPFAM
    • Other resources with information on 3HSA
  • Community annotation for 3HSA at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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