3HX0 Transferase Dna date Jun 19, 2009
title Ternary Complex Of L277a, H511a, R514 Mutant Pol Lambda Boun Nucleotide Gapped Dna Substrate With A Scrunched Da
authors M.Garcia-Diaz, K.Bebenek, A.A.Larrea, J.M.Havener, L.Perera, J.M. L.C.Pedersen, D.A.Ramsden, T.A.Kunkel
compound source
Molecule: Dna Polymerase Lambda
Chain: A, F, K, P
Fragment: Unp Residues 242-575, Catalytic Domain
Synonym: Pol Lambda,Dna Polymerase Beta-2,Pol Beta2,Dna Pol Kappa;
Ec: 2.7.7.7,4.2.99.-
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Poll
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-22b

Molecule: 5'-D(Cpgpgpcpapapaptpapcptpg)-3'
Chain: B, G, L, Q
Engineered: Yes
Other_details: Dna Template

Synthetic: Yes
Other_details: Synthesized Template

Molecule: 5'-D(Cpapgptpapt)-3'
Chain: C, H, M, R
Engineered: Yes
Other_details: Dna Primer

Synthetic: Yes
Other_details: Synthesized Primer

Molecule: 5'-D(Pgpcpcpg)-3'
Chain: D, I, N, S
Engineered: Yes
Other_details: Dna Downstream Primer

Synthetic: Yes
Other_details: Synthesized Downstream Primer
symmetry Space Group: C 2 2 21
R_factor 0.223 R_Free 0.268
crystal
cell
length a length b length c angle alpha angle beta angle gamma
124.179 131.912 280.412 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.00 Å
ligand D3T, MG, NA enzyme Transferase E.C.2.7.7.7 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, A, P, K


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (246 Kb) [Save to disk]
  • Biological Unit Coordinates (3hx0.pdb1.gz) 63 Kb
  • Biological Unit Coordinates (3hx0.pdb2.gz) 63 Kb
  • Biological Unit Coordinates (3hx0.pdb3.gz) 62 Kb
  • Biological Unit Coordinates (3hx0.pdb4.gz) 62 Kb
  • LPC: Ligand-Protein Contacts for 3HX0
  • CSU: Contacts of Structural Units for 3HX0
  • Structure Factors (491 Kb)
  • Retrieve 3HX0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3HX0 from S2C, [Save to disk]
  • Re-refined 3hx0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3HX0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3HX0
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3HX0, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3hx0_C] [3hx0_S] [3hx0_A] [3hx0_F] [3hx0_B] [3hx0_L] [3hx0_Q] [3hx0] [3hx0_I] [3hx0_G] [3hx0_N] [3hx0_M] [3hx0_H] [3hx0_D] [3hx0_P] [3hx0_R] [3hx0_K]
  • SWISS-PROT database: [Q9UGP5]
  • Domain organization of [DPOLL_HUMAN] by SWISSPFAM
  • Domains found in 3HX0: [HhH1] [POLXc ] by SMART
  • Other resources with information on 3HX0
  • Community annotation for 3HX0 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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