3HY5 Transport Protein date Jun 22, 2009
title Crystal Structure Of Cralbp
authors A.Stocker, X.He, J.Lobsiger
compound source
Molecule: Retinaldehyde-Binding Protein 1
Chain: A
Synonym: Cellular Retinaldehyde-Binding Protein
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cralbp, Rlbp1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a
symmetry Space Group: P 65 2 2
R_factor 0.239 R_Free 0.272
crystal
cell
length a length b length c angle alpha angle beta angle gamma
71.930 71.930 303.160 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.04 Å
ligand RET, TLA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceBothnia dystrophy is caused by domino-like rearrangements in cellular retinaldehyde-binding protein mutant R234W., He X, Lobsiger J, Stocker A, Proc Natl Acad Sci U S A. 2009 Nov 3;106(44):18545-50. Epub 2009 Oct 21. PMID:19846785
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (107 Kb) [Save to disk]
  • Biological Unit Coordinates (3hy5.pdb1.gz) 101 Kb
  • LPC: Ligand-Protein Contacts for 3HY5
  • CSU: Contacts of Structural Units for 3HY5
  • Structure Factors (57 Kb)
  • Retrieve 3HY5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3HY5 from S2C, [Save to disk]
  • Re-refined 3hy5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3HY5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3HY5
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3HY5, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3hy5_A] [3hy5]
  • SWISS-PROT database: [P12271]
  • Domain organization of [RLBP1_HUMAN] by SWISSPFAM
  • Domains found in 3HY5: [CRAL_TRIO_N] [SEC14 ] by SMART
  • Other resources with information on 3HY5
  • Community annotation for 3HY5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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