3HYB Chaperone date Jun 22, 2009
title Crystal Structure Of Rbcx From Anabaena, Crystal Form II
authors A.Bracher, C.Liu
compound source
Molecule: Rbcx Protein
Chain: A, B
Engineered: Yes
Organism_scientific: Anabaena Sp.
Organism_taxid: 1167
Gene: Rbcx
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28b
symmetry Space Group: P 31 2 1
R_factor 0.246 R_Free 0.275
crystal
cell
length a length b length c angle alpha angle beta angle gamma
74.990 74.990 123.841 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.30 Å
ligand SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCoupled chaperone action in folding and assembly of hexadecameric Rubisco., Liu C, Young AL, Starling-Windhof A, Bracher A, Saschenbrecker S, Rao BV, Rao KV, Berninghausen O, Mielke T, Hartl FU, Beckmann R, Hayer-Hartl M, Nature. 2010 Jan 14;463(7278):197-202. PMID:20075914
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (44 Kb) [Save to disk]
  • Biological Unit Coordinates (3hyb.pdb1.gz) 37 Kb
  • LPC: Ligand-Protein Contacts for 3HYB
  • CSU: Contacts of Structural Units for 3HYB
  • Structure Factors (929 Kb)
  • Retrieve 3HYB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3HYB from S2C, [Save to disk]
  • Re-refined 3hyb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3HYB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3HYB
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3HYB, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3hyb_A] [3hyb] [3hyb_B]
  • SWISS-PROT database: [Q44212]
  • Domain organization of [Q44212_9NOST] by SWISSPFAM
  • Other resources with information on 3HYB
  • Community annotation for 3HYB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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