3HYW Oxidoreductase date Jun 23, 2009
title 3-D X-Ray Structure Of The Sulfide:Quinone Oxidoreductase Of Hyperthermophilic Bacterium Aquifex Aeolicus In Complex Wit Decylubiquinone
authors M.Marcia, U.Ermler, G.H.Peng, H.Michel
compound source
Molecule: Sulfide-Quinone Reductase
Chain: A, B, C, D, E, F
Synonym: Sulfide:Quinone Oxidoreductase
Ec: 1.8.5.-
Organism_scientific: Aquifex Aeolicus
Organism_taxid: 63363
Strain: Vf5
symmetry Space Group: P 21 21 21
R_factor 0.200 R_Free 0.236
crystal
cell
length a length b length c angle alpha angle beta angle gamma
110.780 154.010 175.550 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand CSS, DCQ, FAD, H2S, LMT, PS9, SO4 enzyme Oxidoreductase E.C.1.8.5 BRENDA
note 3HYW supersedes 3H28
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Primary referenceThe structure of Aquifex aeolicus sulfide:quinone oxidoreductase, a basis to understand sulfide detoxification and respiration., Marcia M, Ermler U, Peng G, Michel H, Proc Natl Acad Sci U S A. 2009 Jun 1. PMID:19487671
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (440 Kb) [Save to disk]
  • Biological Unit Coordinates (3hyw.pdb1.gz) 219 Kb
  • Biological Unit Coordinates (3hyw.pdb2.gz) 218 Kb
  • Biological Unit Coordinates (3hyw.pdb3.gz) 428 Kb
  • LPC: Ligand-Protein Contacts for 3HYW
  • CSU: Contacts of Structural Units for 3HYW
  • Likely Quarternary Molecular Structure file(s) for 3HYW
  • Structure Factors (3033 Kb)
  • Retrieve 3HYW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3HYW from S2C, [Save to disk]
  • Re-refined 3hyw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3HYW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3HYW
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3HYW, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3hyw_A] [3hyw] [3hyw_D] [3hyw_F] [3hyw_B] [3hyw_C] [3hyw_E]
  • SWISS-PROT database: [O67931]
  • Domain organization of [O67931_AQUAE] by SWISSPFAM
  • Other resources with information on 3HYW
  • Community annotation for 3HYW at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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