3HZ3 Transferase date Jun 23, 2009
title Lactobacillus Reuteri N-Terminally Truncated Glucansucrase Gtf180(D1025n)-Sucrose Complex
authors A.Vujicic-Zagar, T.Pijning, S.Kralj, W.Eeuwema, L.Dijkhuizen, B.W
compound source
Molecule: Glucansucrase
Chain: A
Fragment: N-Terminally Truncated Gtf180, Unp Residues 742-1
Ec: 2.4.1.5
Engineered: Yes
Mutation: Yes
Organism_scientific: Lactobacillus Reuteri
Organism_taxid: 1598
Strain: 180
Gene: Gtf180
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b
symmetry Space Group: P 1
R_factor 0.193 R_Free 0.243
crystal
cell
length a length b length c angle alpha angle beta angle gamma
57.782 66.233 82.724 107.13 101.37 85.40
method X-Ray Diffractionresolution 2.22 Å
ligand CA, FRU, GLC enzyme Transferase E.C.2.4.1.5 BRENDA
note 3HZ3 (Molecule of the Month:pdb138)
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of a 117 kDa glucansucrase fragment provides insight into evolution and product specificity of GH70 enzymes., Vujicic-Zagar A, Pijning T, Kralj S, Lopez CA, Eeuwema W, Dijkhuizen L, Dijkstra BW, Proc Natl Acad Sci U S A. 2010 Nov 30. PMID:21118988
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (170 Kb) [Save to disk]
  • Biological Unit Coordinates (3hz3.pdb1.gz) 164 Kb
  • LPC: Ligand-Protein Contacts for 3HZ3
  • CSU: Contacts of Structural Units for 3HZ3
  • Structure Factors (780 Kb)
  • Retrieve 3HZ3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3HZ3 from S2C, [Save to disk]
  • Re-refined 3hz3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3HZ3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3HZ3
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3HZ3, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3hz3_A] [3hz3]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3HZ3: [Aamy ] by SMART
  • Other resources with information on 3HZ3
  • Community annotation for 3HZ3 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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