3HZJ Hydrolase Activator date Jun 23, 2009
title Crystal Structure Of The Rabgap Domain Of The Rabgap1l Prote
authors L.Nedyalkova, W.Tempel, Y.Tong, N.Zhong, F.Mackenzie, C.H.Arrowsm A.M.Edwards, C.Bountra, J.Weigelt, A.Bochkarev, H.Park, Structur Genomics Consortium (Sgc)
compound source
Molecule: Rab Gtpase-Activating Protein 1-Like
Chain: A, B, C
Synonym: Rabgap1l
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rabgap1l, Hhl, Kiaa0471
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21-V2r-Prare2
Expression_system_plasmid: Pet28-Mhl
symmetry Space Group: P 21 21 21
R_factor 0.244 R_Free 0.274
crystal
cell
length a length b length c angle alpha angle beta angle gamma
48.086 64.571 290.255 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand MSE, UNX enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (281 Kb) [Save to disk]
  • Biological Unit Coordinates (3hzj.pdb1.gz) 97 Kb
  • Biological Unit Coordinates (3hzj.pdb2.gz) 82 Kb
  • Biological Unit Coordinates (3hzj.pdb3.gz) 98 Kb
  • LPC: Ligand-Protein Contacts for 3HZJ
  • CSU: Contacts of Structural Units for 3HZJ
  • Likely Quarternary Molecular Structure file(s) for 3HZJ
  • Structure Factors (1292 Kb)
  • Retrieve 3HZJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3HZJ from S2C, [Save to disk]
  • Re-refined 3hzj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3HZJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3HZJ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3HZJ, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3hzj_C] [3hzj_A] [3hzj] [3hzj_B]
  • SWISS-PROT database: [Q5R372]
  • Domain organization of [RBG1L_HUMAN] by SWISSPFAM
  • Domain found in 3HZJ: [TBC ] by SMART
    • Other resources with information on 3HZJ
  • Community annotation for 3HZJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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