3I0F Transferase date Jun 25, 2009
title Crystal Structure Of Gtb C80sc196s + Udp + H Antigen
authors B.Schuman, M.Persson, R.C.Landry, R.Polakowski, J.T.Weadge, N.O.L S.Borisova, M.M.Palcic, S.V.Evans
compound source
Molecule: Abo Glycosyltransferase
Chain: A
Fragment: Unp Residues 59 To 344
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gtb
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pcw(Delta)Lac
symmetry Space Group: C 2 2 21
R_factor 0.189 R_Free 0.217
crystal
cell
length a length b length c angle alpha angle beta angle gamma
52.459 149.350 79.584 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.56 Å
ligand BHG, FUC, MN, U, UDP enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCysteine-to-serine mutants dramatically reorder the active site of human ABO(H) blood group B glycosyltransferase without affecting activity: structural insights into cooperative substrate binding., Schuman B, Persson M, Landry RC, Polakowski R, Weadge JT, Seto NO, Borisova SN, Palcic MM, Evans SV, J Mol Biol. 2010 Sep 17;402(2):399-411. Epub 2010 Jul 23. PMID:20655926
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (57 Kb) [Save to disk]
  • Biological Unit Coordinates (3i0f.pdb1.gz) 101 Kb
  • LPC: Ligand-Protein Contacts for 3I0F
  • CSU: Contacts of Structural Units for 3I0F
  • Structure Factors (654 Kb)
  • Retrieve 3I0F in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3I0F from S2C, [Save to disk]
  • Re-refined 3i0f structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3I0F in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3I0F
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3I0F, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3i0f_A] [3i0f]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3I0F
  • Community annotation for 3I0F at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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