4V6C Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting date
authors Zhang, W., Dunkle, J.A., Cate, J.H.D.
compound source
symmetry
R_factor
R_Free 0.252
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.19
note 4V6C supersedes 3I1M, 3I1N, 3I1O, 3I1P
Gene
Ontology
ChainFunctionProcessComponent
AB, CB


AC, CC


AH, CH


AI, CI


AL, CL


AM, CM


AN, CN


AO, CO
  • mRNA binding involved in pos...


    • AS, CS


    AT, CT
  • ornithine decarboxylase inhi...


    • AU, CU


    B0, D0


    B1, D1


    B3, D3


    B4, D4


    BC, DC


    BE, DE


    BF, DF


    BL, DL


    BN, DN


    BO, DO


    BQ, DQ
  • translation repressor activi...


    • BS, DS


    BT, DT


    BW, DW


    BX, DX


    BY, DY


    CD, AD


    CE, AE


    CF, AF


    CG, AG


    CJ, AJ


    CK, AK


    CP, AP
  • nuclease activity
  • endonuclease activity
  • endodeoxyribonuclease activi...


    • CQ, AQ


    CR, AR


    D2, B2


    DD, BD


    DG, BG


    DH, BH


    DI, BI


    DJ, BJ


    DK, BK


    DM, BM


    DP, BP


    DR, BR


    DU, BU


    DV, BV


    DZ, BZ


    Primary referenceStructures of the ribosome in intermediate states of ratcheting., Zhang W, Dunkle JA, Cate JH, Science. 2009 Aug 21;325(5943):1014-7. PMID:19696352
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (2170 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 4V6C
  • Structure Factors (7789 Kb)
  • Retrieve 4V6C in mmCIF format [Save to disk]
    • View 4V6C in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4V6C
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4v6c_BB] [4v6c_CR] [4v6c_DI] [4v6c_D3] [4v6c_AM] [4v6c_B1] [4v6c_DA] [4v6c_AO] [4v6c_BC] [4v6c_CE] [4v6c_DG] [4v6c] [4v6c_CJ] [4v6c_BA] [4v6c_DL] [4v6c_CK] [4v6c_BF] [4v6c_CM] [4v6c_B4] [4v6c_D1] [4v6c_DB] [4v6c_AF] [4v6c_DP] [4v6c_CL] [4v6c_AQ] [4v6c_DN] [4v6c_AD] [4v6c_BE] [4v6c_DV] [4v6c_BG] [4v6c_BV] [4v6c_BU] [4v6c_DZ] [4v6c_CH] [4v6c_CF] [4v6c_BQ] [4v6c_DQ] [4v6c_AA] [4v6c_CC] [4v6c_AU] [4v6c_AN] [4v6c_CI] [4v6c_CP] [4v6c_DD] [4v6c_DS] [4v6c_DO] [4v6c_AL] [4v6c_D0] [4v6c_AC] [4v6c_CS] [4v6c_AS] [4v6c_BZ] [4v6c_B0] [4v6c_D2] [4v6c_BO] [4v6c_BD] [4v6c_DC] [4v6c_BP] [4v6c_BW] [4v6c_AI] [4v6c_CD] [4v6c_AK] [4v6c_CB] [4v6c_CA] [4v6c_CG] [4v6c_B2] [4v6c_BY] [4v6c_AR] [4v6c_BM] [4v6c_AH] [4v6c_CO] [4v6c_BH] [4v6c_AB] [4v6c_AT] [4v6c_BT] [4v6c_BJ] [4v6c_DJ] [4v6c_BR] [4v6c_CU] [4v6c_DM] [4v6c_DK] [4v6c_AP] [4v6c_DT] [4v6c_DH] [4v6c_DX] [4v6c_AG] [4v6c_CQ] [4v6c_BL] [4v6c_BK] [4v6c_AE] [4v6c_DF] [4v6c_D4] [4v6c_B3] [4v6c_DU] [4v6c_AJ] [4v6c_DR] [4v6c_DW] [4v6c_BI] [4v6c_CN] [4v6c_BN] [4v6c_DY] [4v6c_BX] [4v6c_BS] [4v6c_CT] [4v6c_DE]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4V6C: [KH] [KOW] [RL11] [Ribosomal_L14] [Ribosomal_L2] [Ribosomal_L2_C] [Ribosomal_S10] [Ribosomal_S15] [Ribosomal_S4] [S4 ] by SMART
    • Other resources with information on 4V6C
  • Community annotation for 4V6C at PDBWiki (http://pdbwiki.org)

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