4V6E Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting date
authors Zhang, W., Dunkle, J.A., Cate, J.H.D.
compound source
symmetry
R_factor
R_Free 0.268
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.71
note 4V6E supersedes 3I1Z, 3I20, 3I21, 3I22
Gene
Ontology
ChainFunctionProcessComponent
AB, CB


AC, CC


AH, CH


AI, CI


AL, CL


AM, CM


AN, CN


AO, CO
  • mRNA binding involved in pos...


  • AS, CS


    AT, CT
  • ornithine decarboxylase inhi...


  • AU, CU


    B0, D0


    B1, D1


    B3, D3


    B4, D4


    BC, DC


    BE, DE


    BF, DF


    BL, DL


    BN, DN


    BO, DO


    BQ, DQ
  • translation repressor activi...


  • BS, DS


    BT, DT


    BW, DW


    BX, DX


    BY, DY


    CD, AD


    CE, AE


    CF, AF


    CG, AG


    CJ, AJ


    CK, AK


    CP, AP
  • nuclease activity
  • endonuclease activity
  • endodeoxyribonuclease activi...


  • CQ, AQ


    CR, AR


    D2, B2


    DD, BD


    DG, BG


    DH, BH


    DI, BI


    DJ, BJ


    DK, BK


    DM, BM


    DP, BP


    DR, BR


    DU, BU


    DV, BV


    DZ, BZ


    Primary referenceStructures of the ribosome in intermediate states of ratcheting., Zhang W, Dunkle JA, Cate JH, Science. 2009 Aug 21;325(5943):1014-7. PMID:19696352
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (2232 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 4V6E
  • Structure Factors (3997 Kb)
  • Retrieve 4V6E in mmCIF format [Save to disk]
  • View 4V6E in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4V6E
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4v6e_BG] [4v6e_AG] [4v6e_DV] [4v6e_AA] [4v6e] [4v6e_DG] [4v6e_DZ] [4v6e_DX] [4v6e_CC] [4v6e_BD] [4v6e_AO] [4v6e_D2] [4v6e_B0] [4v6e_DP] [4v6e_BM] [4v6e_DA] [4v6e_AJ] [4v6e_BZ] [4v6e_AI] [4v6e_BQ] [4v6e_CA] [4v6e_D0] [4v6e_CR] [4v6e_DR] [4v6e_BR] [4v6e_AT] [4v6e_D4] [4v6e_AL] [4v6e_B2] [4v6e_AE] [4v6e_BT] [4v6e_DL] [4v6e_BP] [4v6e_DM] [4v6e_CG] [4v6e_AN] [4v6e_CT] [4v6e_BA] [4v6e_AS] [4v6e_BB] [4v6e_AU] [4v6e_AQ] [4v6e_CV] [4v6e_CN] [4v6e_DJ] [4v6e_DH] [4v6e_BH] [4v6e_BE] [4v6e_B1] [4v6e_AD] [4v6e_DC] [4v6e_AB] [4v6e_CK] [4v6e_DF] [4v6e_BF] [4v6e_DE] [4v6e_AP] [4v6e_BS] [4v6e_DN] [4v6e_CI] [4v6e_CS] [4v6e_CO] [4v6e_AW] [4v6e_D1] [4v6e_AH] [4v6e_AM] [4v6e_AK] [4v6e_BI] [4v6e_DQ] [4v6e_AX] [4v6e_BW] [4v6e_CQ] [4v6e_BC] [4v6e_CL] [4v6e_CD] [4v6e_BN] [4v6e_BO] [4v6e_BX] [4v6e_CM] [4v6e_CW] [4v6e_D3] [4v6e_CB] [4v6e_DO] [4v6e_CJ] [4v6e_CX] [4v6e_BJ] [4v6e_B3] [4v6e_DT] [4v6e_DY] [4v6e_BL] [4v6e_AF] [4v6e_CH] [4v6e_CP] [4v6e_BK] [4v6e_DU] [4v6e_B4] [4v6e_DI] [4v6e_DD] [4v6e_AC] [4v6e_BV] [4v6e_CF] [4v6e_BY] [4v6e_DK] [4v6e_DB] [4v6e_DW] [4v6e_DS] [4v6e_AV] [4v6e_CU] [4v6e_AR] [4v6e_BU] [4v6e_CE]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4V6E: [KH] [KOW] [RL11] [Ribosomal_L14] [Ribosomal_L2] [Ribosomal_L2_C] [Ribosomal_S10] [Ribosomal_S15] [Ribosomal_S4] [S4 ] by SMART
  • Other resources with information on 4V6E
  • Community annotation for 4V6E at PDBWiki (http://pdbwiki.org)

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