3I50	Viral Protein Immune System	date	Jul 03, 2009
title	Crystal Structure Of The West Nile Virus Envelope Glycoprote Complex With The E53 Antibody Fab
authors	G.E.Nybakken, J.T.Warren, B.R.Chen, C.A.Nelson, D.H.Fremont
compound		source
Molecule: Envelope Glycoprotein Chain: E Engineered: Yes		Organism_scientific: West Nile Virus Organism_taxid: 11082 Strain: Ny 1999 Gene: Envelope Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21-Codonplus(De3)-Ril Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet21
Molecule: Murine Kappa Light Chain Of E53 Monoclonal Antibo Chain: L Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090 Strain: Balbc Cell: Hybridoma Gene: Light Chain Of E53 Antibody Expression_system: Mus Musculus Expression_system_common: Mouse Expression_system_taxid: 10090 Other_details: B-Cell Hybridoma Cells
Molecule: Murine Heavy Chain (Igg3) Of E53 Monoclonal Antib Chain: H Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090 Strain: Balbc Cell: Hybridoma Gene: Heavy Chain Of E53 Antibody Expression_system: Mus Musculus Expression_system_common: Mouse Expression_system_taxid: 10090 Other_details: B-Cell Hybridoma Cells
symmetry	Space Group: P 21 21 2	R_factor 0.247 R_Free 0.344
crystal cell	length a length b length c angle alpha angle beta angle gamma 146.410 160.140 43.880 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.00 Å
Gene Ontology	Chain Function Process Component E
Primary reference	Structural basis for the preferential recognition of immature flaviviruses by a fusion-loop antibody., Cherrier MV, Kaufmann B, Nybakken GE, Lok SM, Warren JT, Chen BR, Nelson CA, Kostyuchenko VA, Holdaway HA, Chipman PR, Kuhn RJ, Diamond MS, Rossmann MG, Fremont DH, EMBO J. 2009 Oct 21;28(20):3269-76. Epub 2009 Aug 27. PMID:19713934

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (240 Kb) [Save to disk] Biological Unit Coordinates (3i50.pdb1.gz) 234 Kb CSU: Contacts of Structural Units for 3I50 Structure Factors (357 Kb) Retrieve 3I50 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3I50 from S2C, [Save to disk] Re-refined 3i50 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3I50 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3I50

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3I50, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3i50] [3i50_E] [3i50_L] [3i50_H] SWISS-PROT database: [P06935] Domain organization of [POLG_WNV] by SWISSPFAM Domains found in 3I50: [IG_like] [IGv ] by SMART

Other resources with information on 3I50

Community annotation for 3I50 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---