3I5Z Transferase date Jul 06, 2009
title Crystal Structure Of Erk2 Bound To (S)-N-(2-Hydroxy-1-Phenyl (5-Methyl-2-(Phenylamino)Pyrimidin-4-Yl)-1h-Pyrrole-2-Carbo
authors M.D.Jacobs, X.Xie
compound source
Molecule: Mitogen-Activated Protein Kinase 1
Chain: A
Synonym: Extracellular Signal-Regulated Kinase 2, Erk-2, Mi Activated Protein Kinase 2, Map Kinase 2, Mapk 2, P42-Mapk,
Ec: 2.7.11.24
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Erk2, Mapk1, Prkm1, Prkm2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pt7blue
symmetry Space Group: P 21 21 21
R_factor 0.214 R_Free 0.258
crystal
cell
length a length b length c angle alpha angle beta angle gamma
43.948 70.751 118.460 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand SO4, Z48 BindingDB enzyme Transferase E.C.2.7.11.24 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • chemical synaptic transmissi...

  • Primary referenceStructure-guided design of potent and selective pyrimidylpyrrole inhibitors of extracellular signal-regulated kinase (ERK) using conformational control., Aronov AM, Tang Q, Martinez-Botella G, Bemis GW, Cao J, Chen G, Ewing NP, Ford PJ, Germann UA, Green J, Hale MR, Jacobs M, Janetka JW, Maltais F, Markland W, Namchuk MN, Nanthakumar S, Poondru S, Straub J, ter Haar E, Xie X, J Med Chem. 2009 Oct 22;52(20):6362-8. PMID:19827834
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (63 Kb) [Save to disk]
  • Biological Unit Coordinates (3i5z.pdb1.gz) 58 Kb
  • LPC: Ligand-Protein Contacts for 3I5Z
  • CSU: Contacts of Structural Units for 3I5Z
  • Structure Factors (115 Kb)
  • Retrieve 3I5Z in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3I5Z from S2C, [Save to disk]
  • Re-refined 3i5z structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3I5Z in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3I5Z
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3I5Z, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3i5z] [3i5z_A]
  • SWISS-PROT database: [P28482]
  • Domain organization of [MK01_HUMAN] by SWISSPFAM
  • Domain found in 3I5Z: [S_TKc ] by SMART
  • Other resources with information on 3I5Z
  • Community annotation for 3I5Z at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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