3I6J Hydrolase date Jul 07, 2009
title Ribonuclease A By Classical Hanging Drop Method After High X On Esrf Id14-2 Beamline
authors E.Pechkova, S.K.Tripathi, R.Ravelli, S.Mcsweeney, C.Nicolini
compound source
Molecule: Ribonuclease Pancreatic
Chain: A
Synonym: Rnase 1, Rnase A
Ec: 3.1.27.5
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
Tissue: Pancreas
symmetry Space Group: P 32 2 1
R_factor 0.209 R_Free 0.234
crystal
cell
length a length b length c angle alpha angle beta angle gamma
64.362 64.362 63.745 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.30 Å
ligand CL enzyme Hydrolase E.C.3.1.27.5 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • ribonuclease A activity


  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (46 Kb) [Save to disk]
  • Biological Unit Coordinates (3i6j.pdb1.gz) 82 Kb
  • LPC: Ligand-Protein Contacts for 3I6J
  • CSU: Contacts of Structural Units for 3I6J
  • Structure Factors (1792 Kb)
  • Retrieve 3I6J in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3I6J from S2C, [Save to disk]
  • Re-refined 3i6j structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3I6J in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3I6J
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3I6J, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3i6j_A] [3i6j]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3I6J: [RNAse_Pc ] by SMART
  • Other resources with information on 3I6J
  • Community annotation for 3I6J at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
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