3I7I	Hydrolase	date	Jul 08, 2009
title	Mmp-13 In Complex With A Non Zinc-Chelating Inhibitor
authors	N.A.Farrow, S.M.Margarit
compound		source
Molecule: Collagenase 3 Chain: A, B Fragment: Unp Residues 104-274 Synonym: Matrix Metalloproteinase-13, Mmp-13 Ec: 3.4.24.- Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Mmp13 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: C 1 2 1	R_factor 0.230 R_Free 0.314
crystal cell	length a length b length c angle alpha angle beta angle gamma 134.186 35.777 95.295 90.00 131.08 90.00
method	X-Ray Diffraction	resolution	2.21 Å
ligand	518, CA, ZN BindingDB	enzyme	Hydrolase E.C.3.4.24 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Improving potency and selectivity of a new class of non-Zn-chelating MMP-13 inhibitors., Heim-Riether A, Taylor SJ, Liang S, Gao DA, Xiong Z, Michael August E, Collins BK, Farmer BT 2nd, Haverty K, Hill-Drzewi M, Junker HD, Mariana Margarit S, Moss N, Neumann T, Proudfoot JR, Keenan LS, Sekul R, Zhang Q, Li J, Farrow NA, Bioorg Med Chem Lett. 2009 Sep 15;19(18):5321-4. Epub 2009 Aug 3. PMID:19692239

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (64 Kb) [Save to disk] Biological Unit Coordinates (3i7i.pdb1.gz) 59 Kb Biological Unit Coordinates (3i7i.pdb2.gz) 115 Kb LPC: Ligand-Protein Contacts for 3I7I CSU: Contacts of Structural Units for 3I7I Structure Factors (302 Kb) Retrieve 3I7I in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3I7I from S2C, [Save to disk] Re-refined 3i7i structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3I7I in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3I7I

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3I7I, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3i7i] [3i7i_A] [3i7i_B] SWISS-PROT database: [P45452] Domain organization of [MMP13_HUMAN] by SWISSPFAM Domain found in 3I7I: [ZnMc ] by SMART

Other resources with information on 3I7I

Community annotation for 3I7I at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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