4V6F Elongation complex of the 70S ribosome with three tRNAs and mRNA. date
authors Jenner, L.B., Yusupova, G., Yusupov, M.
compound source
symmetry
R_factor
R_Free 0.255
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.10
note 4V6F supersedes 3I8F, 3I8G, 3I8H, 3I8I
Gene
Ontology
ChainFunctionProcessComponent
A1, D1


A2, D2


A3, D3


AE, DE


AF, DF


AM, DM


AN, DN


AO, DO


AS, DS


AT, DT


AW, DW


AX, DX


AZ, DZ


BF, CF


BI, CI


BL, CL


BN, CN


BO, CO


BQ, CQ


BS, CS


BW, CW


BX, CX


CE, BE


CG, BG


CH, BH


CJ, BJ


CK, BK


CM, BM


CP, BP


CR, BR


CT, BT


CU, BU


CV, BV


D0, A0


D4, A4


D5, A5


D6, A6


D7, A7


D8, A8


DD, AD


DG, AG


DH, AH


DJ, DI


DK, AK


DL


DP, AP


DQ, AQ


DR, AR


DU, AU


DV, AV


DY


Primary referenceStructural aspects of messenger RNA reading frame maintenance by the ribosome., Jenner LB, Demeshkina N, Yusupova G, Yusupov M, Nat Struct Mol Biol. 2010 May;17(5):555-60. Epub 2010 Apr 18. PMID:20400952
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1829 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 4V6F
  • Structure Factors (9286 Kb)
  • Retrieve 4V6F in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4V6F from S2C, [Save to disk]
  • View 4V6F in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4V6F
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4v6f_BC] [4v6f_DA] [4v6f_BB] [4v6f_CC] [4v6f_BL] [4v6f_AB] [4v6f_AN] [4v6f_CV] [4v6f_AD] [4v6f_A2] [4v6f_DL] [4v6f_BX] [4v6f_CX] [4v6f_AZ] [4v6f_A5] [4v6f_DZ] [4v6f_BT] [4v6f] [4v6f_AS] [4v6f_DH] [4v6f_DT] [4v6f_A4] [4v6f_CF] [4v6f_B1] [4v6f_BN] [4v6f_D2] [4v6f_CR] [4v6f_DO] [4v6f_DM] [4v6f_CO] [4v6f_AK] [4v6f_DF] [4v6f_DW] [4v6f_CU] [4v6f_A7] [4v6f_CG] [4v6f_DP] [4v6f_AA] [4v6f_DX] [4v6f_CK] [4v6f_BA] [4v6f_D5] [4v6f_AT] [4v6f_BF] [4v6f_BP] [4v6f_AV] [4v6f_AQ] [4v6f_AR] [4v6f_BK] [4v6f_DK] [4v6f_C1] [4v6f_BM] [4v6f_D8] [4v6f_D4] [4v6f_DJ] [4v6f_AU] [4v6f_AM] [4v6f_DN] [4v6f_AF] [4v6f_AH] [4v6f_DR] [4v6f_CH] [4v6f_AO] [4v6f_AX] [4v6f_DB] [4v6f_CI] [4v6f_DQ] [4v6f_CP] [4v6f_A6] [4v6f_A1] [4v6f_D1] [4v6f_DS] [4v6f_CD] [4v6f_D7] [4v6f_CQ] [4v6f_BJ] [4v6f_CM] [4v6f_CL] [4v6f_DU] [4v6f_BG] [4v6f_CB] [4v6f_BH] [4v6f_DD] [4v6f_BW] [4v6f_CN] [4v6f_CE] [4v6f_A8] [4v6f_BE] [4v6f_CJ] [4v6f_DI] [4v6f_AG] [4v6f_DY] [4v6f_AW] [4v6f_D0] [4v6f_D3] [4v6f_DE] [4v6f_DV] [4v6f_CW] [4v6f_BU] [4v6f_BV] [4v6f_AE] [4v6f_CT] [4v6f_BR] [4v6f_BQ] [4v6f_A3] [4v6f_BI] [4v6f_BO] [4v6f_CA] [4v6f_BD] [4v6f_BS] [4v6f_D6] [4v6f_A0] [4v6f_DG] [4v6f_AP] [4v6f_CS]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4V6F: [KH] [KOW] [RL11] [Ribosomal_L14] [Ribosomal_L2] [Ribosomal_L2_C] [Ribosomal_S10] [Ribosomal_S15] [Ribosomal_S4] [S4 ] by SMART
  • Other resources with information on 4V6F
  • Community annotation for 4V6F at PDBWiki (http://pdbwiki.org)

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