3IK3 Transferase date Aug 05, 2009
title Ap24534, A Pan-Bcr-Abl Inhibitor For Chronic Myeloid Leukemi Potently Inhibits The T315i Mutant And Overcomes Mutation-B Resistance
authors T.Zhou
compound source
Molecule: Proto-Oncogene Tyrosine-Protein Kinase Abl1
Chain: A, B
Synonym: Abelson Murine Leukemia Viral Oncogene Homolog 1, P150;
Ec: 2.7.10.2
Engineered: Yes
Mutation: Yes
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Abl1, Abl
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21de3
Expression_system_vector_type: Plasmid
symmetry Space Group: P 1 21 1
R_factor 0.216 R_Free 0.258
crystal
cell
length a length b length c angle alpha angle beta angle gamma
43.907 131.453 60.200 90.00 92.87 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand 0LI BindingDB enzyme Transferase E.C.2.7.10.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceAP24534, a pan-BCR-ABL inhibitor for chronic myeloid leukemia, potently inhibits the T315I mutant and overcomes mutation-based resistance., O'Hare T, Shakespeare WC, Zhu X, Eide CA, Rivera VM, Wang F, Adrian LT, Zhou T, Huang WS, Xu Q, Metcalf CA 3rd, Tyner JW, Loriaux MM, Corbin AS, Wardwell S, Ning Y, Keats JA, Wang Y, Sundaramoorthi R, Thomas M, Zhou D, Snodgrass J, Commodore L, Sawyer TK, Dalgarno DC, Deininger MW, Druker BJ, Clackson T, Cancer Cell. 2009 Nov 6;16(5):401-12. PMID:19878872
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (107 Kb) [Save to disk]
  • Biological Unit Coordinates (3ik3.pdb1.gz) 52 Kb
  • Biological Unit Coordinates (3ik3.pdb2.gz) 53 Kb
  • LPC: Ligand-Protein Contacts for 3IK3
  • CSU: Contacts of Structural Units for 3IK3
  • Structure Factors (641 Kb)
  • Retrieve 3IK3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3IK3 from S2C, [Save to disk]
  • Re-refined 3ik3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3IK3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3IK3
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3IK3, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ik3] [3ik3_A] [3ik3_B]
  • SWISS-PROT database: [P00520]
  • Domain organization of [ABL1_MOUSE] by SWISSPFAM
  • Domain found in 3IK3: [TyrKc ] by SMART
  • Other resources with information on 3IK3
  • Community annotation for 3IK3 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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