3IKD	Isomerase	date	Aug 05, 2009
title	Structure-Based Design Of Novel Pin1 Inhibitors (I)
authors	D.Matthews, S.Greasley, R.Ferre, H.Parge
compound		source
Molecule: Peptidyl-Prolyl Cis-Trans Isomerase Nima-Interact Chain: A, B Fragment: Unp Residues 45-163, Pin1 Ppiase Domain Synonym: Rotamase Pin1, Ppiase Pin1 Ec: 5.2.1.8 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Pin1 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: C 1 2 1	R_factor 0.203 R_Free 0.203
crystal cell	length a length b length c angle alpha angle beta angle gamma 117.354 36.028 51.281 90.00 100.30 90.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand	J9Z BindingDB	enzyme	Isomerase E.C.5.2.1.8 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structure-based design of novel human Pin1 inhibitors (I)., Guo C, Hou X, Dong L, Dagostino E, Greasley S, Ferre R, Marakovits J, Johnson MC, Matthews D, Mroczkowski B, Parge H, Vanarsdale T, Popoff I, Piraino J, Margosiak S, Thomson J, Los G, Murray BW, Bioorg Med Chem Lett. 2009 Oct 1;19(19):5613-6. Epub 2009 Aug 13. PMID:19729306

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (57 Kb) [Save to disk] Biological Unit Coordinates (3ikd.pdb1.gz) 27 Kb Biological Unit Coordinates (3ikd.pdb2.gz) 26 Kb LPC: Ligand-Protein Contacts for 3IKD CSU: Contacts of Structural Units for 3IKD Structure Factors (140 Kb) Retrieve 3IKD in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3IKD from S2C, [Save to disk] Re-refined 3ikd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3IKD in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3IKD

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3IKD, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3ikd] [3ikd_B] [3ikd_A] SWISS-PROT database: [Q13526] Domain organization of [PIN1_HUMAN] by SWISSPFAM

Other resources with information on 3IKD

Community annotation for 3IKD at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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