3IKG Isomerase date Aug 05, 2009
title Structure-Based Design Of Novel Pin1 Inhibitors (I)
authors H.Parge, R.A.Ferre, S.Greasley, D.Matthews
compound source
Molecule: Peptidyl-Prolyl Cis-Trans Isomerase Nima-Interact
Chain: A, B
Fragment: Unp Residues 45-163, Pin1 Ppiase Domain
Synonym: Rotamase Pin1, Ppiase Pin1
Ec: 5.2.1.8
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pin1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
118.255 36.530 51.320 90.00 100.40 90.00
method X-Ray Diffractionresolution 1.86 Å
ligand J8Z BindingDB enzyme Isomerase E.C.5.2.1.8 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure-based design of novel human Pin1 inhibitors (I)., Guo C, Hou X, Dong L, Dagostino E, Greasley S, Ferre R, Marakovits J, Johnson MC, Matthews D, Mroczkowski B, Parge H, Vanarsdale T, Popoff I, Piraino J, Margosiak S, Thomson J, Los G, Murray BW, Bioorg Med Chem Lett. 2009 Oct 1;19(19):5613-6. Epub 2009 Aug 13. PMID:19729306
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (45 Kb) [Save to disk]
  • Biological Unit Coordinates (3ikg.pdb1.gz) 21 Kb
  • Biological Unit Coordinates (3ikg.pdb2.gz) 20 Kb
  • LPC: Ligand-Protein Contacts for 3IKG
  • CSU: Contacts of Structural Units for 3IKG
  • Structure Factors (175 Kb)
  • Retrieve 3IKG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3IKG from S2C, [Save to disk]
  • Re-refined 3ikg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3IKG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3IKG
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3IKG, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ikg] [3ikg_B] [3ikg_A]
  • SWISS-PROT database: [Q13526]
  • Domain organization of [PIN1_HUMAN] by SWISSPFAM
  • Other resources with information on 3IKG
  • Community annotation for 3IKG at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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