3IML Transferase date Aug 10, 2009
title Crystal Structure Of S-Adenosylmethionine Synthetase From Bu Pseudomallei
authors B.L.Staker, Seattle Structural Genomics Center For Infectious (Ssgcid)
compound source
Molecule: S-Adenosylmethionine Synthetase
Chain: A, B, C, D
Fragment: S-Adenosylmethionine Synthetase
Synonym: Methionine Adenosyltransferase, Adomet Synthetase,
Ec: 2.5.1.6
Engineered: Yes
Organism_scientific: Burkholderia Pseudomallei
Organism_common: Pseudomonas Pseudomallei
Organism_taxid: 28450
Gene: Metk, Bpsl0212
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Ava0421
symmetry Space Group: C 1 2 1
R_factor 0.218 R_Free 0.256
crystal
cell
length a length b length c angle alpha angle beta angle gamma
236.303 119.443 65.353 90.00 105.98 90.00
method X-Ray Diffractionresolution 2.35 Å
ligand
enzyme Transferase E.C.2.5.1.6 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceCombining functional and structural genomics to sample the essential Burkholderia structome., Baugh L, Gallagher LA, Patrapuvich R, Clifton MC, Gardberg AS, Edwards TE, Armour B, Begley DW, Dieterich SH, Dranow DM, Abendroth J, Fairman JW, Fox D 3rd, Staker BL, Phan I, Gillespie A, Choi R, Nakazawa-Hewitt S, Nguyen MT, Napuli A, Barrett L, Buchko GW, Stacy R, Myler PJ, Stewart LJ, Manoil C, Van Voorhis WC, PLoS One. 2013;8(1):e53851. doi: 10.1371/journal.pone.0053851. Epub 2013 Jan 31. PMID:23382856
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (211 Kb) [Save to disk]
  • Biological Unit Coordinates (3iml.pdb1.gz) 109 Kb
  • Biological Unit Coordinates (3iml.pdb2.gz) 99 Kb
  • CSU: Contacts of Structural Units for 3IML
  • Structure Factors (1129 Kb)
  • Retrieve 3IML in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3IML from S2C, [Save to disk]
  • Re-refined 3iml structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3IML in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3IML
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3IML, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3iml_C] [3iml_B] [3iml] [3iml_A] [3iml_D]
  • SWISS-PROT database: [Q63YH5]
  • Domain organization of [METK_BURPS] by SWISSPFAM
  • Other resources with information on 3IML
  • Community annotation for 3IML at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science