3INH Hydrolase date Aug 12, 2009
title Bace1 With The Aminohydantoin Compound R-58
authors A.M.Olland, R.Chopra
compound source
Molecule: Beta-Secretase 1
Chain: A
Fragment: Catalytic Domain
Synonym: Beta-Site Amyloid Precursor Protein Cleaving Enzym Site App Cleaving Enzyme 1, Membrane-Associated Aspartic Pr Memapsin-2, Aspartyl Protease 2, Asp 2, Asp2;
Ec: 3.4.23.46
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Bace1, Bace, Kiaa1149
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.210 R_Free 0.224
crystal
cell
length a length b length c angle alpha angle beta angle gamma
73.137 104.330 49.551 90.00 94.69 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand 569 BindingDB enzyme Hydrolase E.C.3.4.23.46 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDesign and synthesis of 5,5'-disubstituted aminohydantoins as potent and selective human beta-secretase (BACE1) inhibitors., Malamas MS, Erdei J, Gunawan I, Turner J, Hu Y, Wagner E, Fan K, Chopra R, Olland A, Bard J, Jacobsen S, Magolda RL, Pangalos M, Robichaud AJ, J Med Chem. 2010 Feb 11;53(3):1146-58. PMID:19968289
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (65 Kb) [Save to disk]
  • Biological Unit Coordinates (3inh.pdb1.gz) 60 Kb
  • LPC: Ligand-Protein Contacts for 3INH
  • CSU: Contacts of Structural Units for 3INH
  • Structure Factors (263 Kb)
  • Retrieve 3INH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3INH from S2C, [Save to disk]
  • Re-refined 3inh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3INH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3INH
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3INH, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3inh_A] [3inh]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3INH
  • Community annotation for 3INH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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