3IPE Hormone date Aug 17, 2009
title Human Transthyretin (Ttr) Complexed With A Palindromic Bival Amyloid Inhibitor (7 Carbon Linker).
authors S.E.Kolstoe, S.P.Wood, M.B.Pepys
compound source
Molecule: Transthyretin
Chain: A, B
Fragment: Unp Residues 21-147
Synonym: Prealbumin, Tbpa, Ttr, Attr
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 21 21 2
R_factor 0.175 R_Free 0.196
crystal
cell
length a length b length c angle alpha angle beta angle gamma
43.241 84.876 63.390 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.40 Å
ligand JZE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • hormone activity


    • Primary referenceTrapping of palindromic ligands within native transthyretin prevents amyloid formation., Kolstoe SE, Mangione PP, Bellotti V, Taylor GW, Tennent GA, Deroo S, Morrison AJ, Cobb AJ, Coyne A, McCammon MG, Warner TD, Mitchell J, Gill R, Smith MD, Ley SV, Robinson CV, Wood SP, Pepys MB, Proc Natl Acad Sci U S A. 2010 Nov 8. PMID:21059958
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (86 Kb) [Save to disk]
  • Biological Unit Coordinates (3ipe.pdb1.gz) 161 Kb
  • LPC: Ligand-Protein Contacts for 3IPE
  • CSU: Contacts of Structural Units for 3IPE
  • Structure Factors (633 Kb)
  • Retrieve 3IPE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3IPE from S2C, [Save to disk]
  • Re-refined 3ipe structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3IPE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3IPE
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3IPE, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ipe_B] [3ipe] [3ipe_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3IPE: [TR_THY ] by SMART
    • Other resources with information on 3IPE
  • Community annotation for 3IPE at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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