3IPO	Transferase	date	Aug 18, 2009
title	Crystal Structure Of Ynje
authors	P.Haenzelmann, J.Kuper, H.Schindelin
compound		source
Molecule: Putative Thiosulfate Sulfurtransferase Ynje Chain: A, B Ec: 2.8.1.1 Engineered: Yes		Organism_scientific: Escherichia Coli K-12 Organism_taxid: 83333 Strain: Escherichia Coli Gene: B1757, Jw5287, Ynje Expression_system: Escherichia Coli Bl21 Expression_system_taxid: 511693 Expression_system_strain: Bl21
symmetry	Space Group: P 63 2 2	R_factor 0.159 R_Free 0.211
crystal cell	length a length b length c angle alpha angle beta angle gamma 160.949 160.949 173.992 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.40 Å
ligand	CSS, GOL, NA, PE4, PG0, PO4	enzyme	Transferase E.C.2.8.1.1 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Crystal structure of YnjE from Escherichia coli, a sulfurtransferase with three rhodanese domains., Hanzelmann P, Dahl JU, Kuper J, Urban A, Muller-Theissen U, Leimkuhler S, Schindelin H, Protein Sci. 2009 Dec;18(12):2480-91. PMID:19798741

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (152 Kb) [Save to disk] Biological Unit Coordinates (3ipo.pdb1.gz) 146 Kb Biological Unit Coordinates (3ipo.pdb2.gz) 146 Kb LPC: Ligand-Protein Contacts for 3IPO CSU: Contacts of Structural Units for 3IPO Structure Factors (2564 Kb) Retrieve 3IPO in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3IPO from S2C, [Save to disk] Re-refined 3ipo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3IPO in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3IPO

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3IPO, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3ipo_A] [3ipo_B] [3ipo] SWISS-PROT database: [P78067] Domain organization of [YNJE_ECOLI] by SWISSPFAM Domain found in 3IPO: [RHOD ] by SMART

Other resources with information on 3IPO

Community annotation for 3IPO at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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