3IQL Protein Binding date Aug 20, 2009
title Crystal Structure Of The Rat Endophilin-A1 Sh3 Domain
authors J.F.Trempe, G.Kozlov, E.M.Camacho, K.Gehring
compound source
Molecule: Endophilin-A1
Chain: A, B
Synonym: Endophilin-1, Sh3 Domain-Containing Grb2-Like Prot Domain Protein 2a, Sh3p4;
Engineered: Yes
Organism_scientific: Rattus Norvegicus
Organism_common: Brown Rat,Rat,Rats
Organism_taxid: 10116
Gene: Sh3d2a, Sh3gl2, Sh3p4
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: K12 Bl21 De3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-2tk
symmetry Space Group: C 1 2 1
R_factor 0.127 R_Free 0.154
crystal
cell
length a length b length c angle alpha angle beta angle gamma
64.338 34.156 62.729 90.00 107.79 90.00
method X-Ray Diffractionresolution 1.40 Å
ligand CL enzyme
Primary referenceSH3 domains from a subset of BAR proteins define a Ubl-binding domain and implicate parkin in synaptic ubiquitination., Trempe JF, Chen CX, Grenier K, Camacho EM, Kozlov G, McPherson PS, Gehring K, Fon EA, Mol Cell. 2009 Dec 25;36(6):1034-47. PMID:20064468
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (58 Kb) [Save to disk]
  • Biological Unit Coordinates (3iql.pdb1.gz) 27 Kb
  • Biological Unit Coordinates (3iql.pdb2.gz) 27 Kb
  • LPC: Ligand-Protein Contacts for 3IQL
  • CSU: Contacts of Structural Units for 3IQL
  • Structure Factors (360 Kb)
  • Retrieve 3IQL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3IQL from S2C, [Save to disk]
  • Re-refined 3iql structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3IQL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3IQL
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3IQL, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3iql_A] [3iql] [3iql_B]
  • SWISS-PROT database: [O35179]
  • Domain organization of [SH3G2_RAT] by SWISSPFAM
  • Domain found in 3IQL: [SH3 ] by SMART
  • Other resources with information on 3IQL
  • Community annotation for 3IQL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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