3IS8 Electron Transport date Aug 25, 2009
title Structure Of Mineralized Bfrb Soaked With Feso4 From Pseudom Aeruginosa To 2.25a Resolution
authors S.Lovell, S.K.Weeratunga, K.P.Battaile, M.Rivera
compound source
Molecule: Bacterioferritin
Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R V, W, X;
Engineered: Yes
Organism_scientific: Pseudomonas Aeruginosa
Organism_taxid: 287
Gene: Bfrb, Pa3531
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Arctic Express Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet11a
symmetry Space Group: P 21 21 21
R_factor 0.177 R_Free 0.226
crystal
cell
length a length b length c angle alpha angle beta angle gamma
125.723 203.278 207.724 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.25 Å
ligand FE2, HEM, K, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
S, F, T, N, K, E, V, Q, M, C, L, A, J, O, W, X, P, B, H, D, R, I, G, U


Primary referenceStructural Studies of Bacterioferritin B from Pseudomonas aeruginosa Suggest a Gating Mechanism for Iron Uptake via the Ferroxidase Center ., Weeratunga SK, Lovell S, Yao H, Battaile KP, Fischer CJ, Gee CE, Rivera M, Biochemistry. 2010 Jan 21. PMID:20067302
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (670 Kb) [Save to disk]
  • Biological Unit Coordinates (3is8.pdb1.gz) 646 Kb
  • LPC: Ligand-Protein Contacts for 3IS8
  • CSU: Contacts of Structural Units for 3IS8
  • Structure Factors (4077 Kb)
  • Retrieve 3IS8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3IS8 from S2C, [Save to disk]
  • Re-refined 3is8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3IS8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3IS8
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3IS8, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3is8] [3is8_K] [3is8_H] [3is8_P] [3is8_V] [3is8_B] [3is8_X] [3is8_S] [3is8_F] [3is8_M] [3is8_T] [3is8_A] [3is8_G] [3is8_L] [3is8_C] [3is8_N] [3is8_R] [3is8_J] [3is8_E] [3is8_W] [3is8_D] [3is8_O] [3is8_Q] [3is8_U] [3is8_I]
  • SWISS-PROT database: [Q9HY79]
  • Domain organization of [Q9HY79_PSEAE] by SWISSPFAM
  • Other resources with information on 3IS8
  • Community annotation for 3IS8 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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