3ITX Isomerase, Metal-Binding Protein date Aug 28, 2009
title Mn2+ Bound Form Of Pseudomonas Stutzeri L-Rhamnose Isomerase
authors H.Yoshida, M.Yamaji, T.Ishii, K.Izumori, S.Kamitori
compound source
Molecule: L-Rhamnose Isomerase
Chain: A, B, C, D
Ec: 5.3.1.14
Engineered: Yes
Mutation: Yes
Organism_scientific: Pseudomonas Stutzeri
Organism_common: Pseudomonas Perfectomarina
Organism_taxid: 316
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Jm109
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pqe60
symmetry Space Group: P 1 21 1
R_factor 0.165 R_Free 0.197
crystal
cell
length a length b length c angle alpha angle beta angle gamma
78.647 105.115 102.526 90.00 102.80 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand MN enzyme Isomerase E.C.5.3.1.14 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceCatalytic reaction mechanism of Pseudomonas stutzeri l-rhamnose isomerase deduced from X-ray structures., Yoshida H, Yamaji M, Ishii T, Izumori K, Kamitori S, FEBS J. 2010 Jan 20. PMID:20088877
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (293 Kb) [Save to disk]
  • Biological Unit Coordinates (3itx.pdb1.gz) 286 Kb
  • LPC: Ligand-Protein Contacts for 3ITX
  • CSU: Contacts of Structural Units for 3ITX
  • Structure Factors (972 Kb)
  • Retrieve 3ITX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3ITX from S2C, [Save to disk]
  • Re-refined 3itx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3ITX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3ITX
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3ITX, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3itx_A] [3itx_D] [3itx_C] [3itx_B] [3itx]
  • SWISS-PROT database: [Q75WH8]
  • Domain organization of [Q75WH8_PSEST] by SWISSPFAM
  • Other resources with information on 3ITX
  • Community annotation for 3ITX at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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