3IVV Ligase date Sep 01, 2009
title Structures Of Spop-Substrate Complexes: Insights Into Molecu Architectures Of Btb-Cul3 Ubiquitin Ligases: Spopmath-Pucsb
authors B.A.Schulman, D.J.Miller, M.F.Calabrese, S.Seyedin
compound source
Molecule: Speckle-Type Poz Protein
Chain: A
Synonym: Hib Homolog 1, Roadkill Homolog 1
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Spop
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Pucsbc1
Chain: D
Engineered: Yes
Synthetic: Yes
symmetry Space Group: C 1 2 1
R_factor 0.177 R_Free 0.199
crystal
cell
length a length b length c angle alpha angle beta angle gamma
60.744 56.492 42.133 90.00 96.11 90.00
method X-Ray Diffractionresolution 1.25 Å
note 3IVV is a representative structure
Primary referenceStructures of SPOP-substrate complexes: insights into molecular architectures of BTB-Cul3 ubiquitin ligases., Zhuang M, Calabrese MF, Liu J, Waddell MB, Nourse A, Hammel M, Miller DJ, Walden H, Duda DM, Seyedin SN, Hoggard T, Harper JW, White KP, Schulman BA, Mol Cell. 2009 Oct 9;36(1):39-50. PMID:19818708
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (62 Kb) [Save to disk]
  • Biological Unit Coordinates (3ivv.pdb1.gz) 58 Kb
  • CSU: Contacts of Structural Units for 3IVV
  • Structure Factors (561 Kb)
  • Retrieve 3IVV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3IVV from S2C, [Save to disk]
  • Re-refined 3ivv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3IVV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3IVV
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3IVV, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ivv] [3ivv_A] [3ivv_D]
  • SWISS-PROT database: [O43791]
  • Domain organization of [SPOP_HUMAN] by SWISSPFAM
  • Domain found in 3IVV: [MATH ] by SMART
    • Other resources with information on 3IVV
  • Community annotation for 3IVV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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