3IWW	Hydrolase	date	Sep 03, 2009
title	Crystal Structure Of Human Glutamate Carboxypeptidase II (Gc Complex With Dbibzl, A Urea-Based Inhibitor
authors	C.Barinka, J.Lubkowski
compound		source
Molecule: Glutamate Carboxypeptidase 2 Chain: A Fragment: Unp Residues 44-750 Synonym: Glutamate Carboxypeptidase II, Membrane Glutamate Carboxypeptidase, Mgcp, N-Acetylated-Alpha-Linked Acidic Di I, Naaladase I, Pteroylpoly-Gamma-Glutamate Carboxypeptidas Folylpoly-Gamma-Glutamate Carboxypeptidase, Fgcp, Folate Hy Prostate-Specific Membrane Antigen, Psma, Psm; Ec: 3.4.17.21 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Folh1, Folh, Naalad1, Psm, Psma Expression_system: Drosophila Melanogaster Expression_system_taxid: 7227 Expression_system_cell_line: Schneider'S S2 Cells Expression_system_vector_type: Plasmid
symmetry	Space Group: I 2 2 2	R_factor 0.165 R_Free 0.206
crystal cell	length a length b length c angle alpha angle beta angle gamma 101.068 130.035 157.951 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.30 Å
ligand	BMA, CA, CL, MAN, NAG, YZE, ZN BindingDB	enzyme	Hydrolase E.C.3.4.17.21 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Bioisosterism of urea-based GCPII inhibitors: Synthesis and structure-activity relationship studies., Wang H, Byun Y, Barinka C, Pullambhatla M, Bhang HE, Fox JJ, Lubkowski J, Mease RC, Pomper MG, Bioorg Med Chem Lett. 2009 Oct 24. PMID:19897367

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (127 Kb) [Save to disk] Biological Unit Coordinates (3iww.pdb1.gz) 236 Kb LPC: Ligand-Protein Contacts for 3IWW CSU: Contacts of Structural Units for 3IWW Structure Factors (279 Kb) Retrieve 3IWW in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3IWW from S2C, [Save to disk] Re-refined 3iww structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3IWW in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3IWW

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3IWW, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3iww] [3iww_A] SWISS-PROT database: [Q04609] Domain organization of [FOLH1_HUMAN] by SWISSPFAM

Other resources with information on 3IWW

Community annotation for 3IWW at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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