3IXJ Hydrolase Hydrolase Inhibitor date Sep 04, 2009
title Crystal Structure Of Beta-Secretase 1 In Complex With Selective Beta-Secretase 1 Inhibitor
authors N.Borkakoti, J.Lindberg, S.Nystrom
compound source
Molecule: Beta-Secretase 1
Chain: A, B, C
Synonym: Beta-Site Amyloid Precursor Protein Cleaving Enzyme 1, Beta-Site App Cleaving Enzyme 1, Membrane- Associated Aspartic Protease 2, Memapsin-2, Aspartyl Protease 2, Asp 2, Asp2;
Ec: 3.4.23.46
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Bace, Bace1, Kiaa1149
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet11a
symmetry Space Group: P 1 21 1
R_factor 0.212 R_Free 0.243
crystal
cell
length a length b length c angle alpha angle beta angle gamma
81.913 102.705 100.417 90.00 103.42 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand 586, SO4 BindingDB enzyme Hydrolase E.C.3.4.23.46 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceDesign and synthesis of potent and selective BACE-1 inhibitors., Bjorklund C, Oscarson S, Benkestock K, Borkakoti N, Jansson K, Lindberg J, Vrang L, Hallberg A, Rosenquist A, Samuelsson B, J Med Chem. 2010 Feb 25;53(4):1458-64. PMID:20128595
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (192 Kb) [Save to disk]
  • Biological Unit Coordinates (3ixj.pdb1.gz) 66 Kb
  • Biological Unit Coordinates (3ixj.pdb2.gz) 66 Kb
  • Biological Unit Coordinates (3ixj.pdb3.gz) 65 Kb
  • LPC: Ligand-Protein Contacts for 3IXJ
  • CSU: Contacts of Structural Units for 3IXJ
  • Structure Factors (626 Kb)
  • Retrieve 3IXJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3IXJ from S2C, [Save to disk]
  • Re-refined 3ixj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3IXJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3IXJ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3IXJ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ixj_C] [3ixj] [3ixj_A] [3ixj_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3IXJ
  • Community annotation for 3IXJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science