3IYW	Virus	date	Jun 18, 2010
title	West Nile Virus In Complex With Fab Fragments Of Mab Cr4354 Coordinates Of Envelope Proteins And Fab Fragments Of One I Asu)
authors	M.G.Rossmann, B.Kaufmann
compound		source
Molecule: Envelope Glycoprotein Chain: A, B, C Fragment: Ectodomain Of Viral Surface Protein Engineered: Yes		Organism_scientific: West Nile Virus Organism_taxid: 11082 Expression_system: Homo Sapiens Expression_system_common: Human Expression_system_taxid: 9606
Molecule: Cr4354 Fab Fragment X1, Heavy Chain H Chain: H, K Fragment: Fab Fragment, Heavy Chain Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Homo Sapiens Expression_system_common: Human Expression_system_taxid: 9606 Expression_system_tissue: Peripheral Blood Expression_system_cell: B Cells
Molecule: Cr4354 Fab Fragment X1, Light Chain L Chain: L, M Fragment: Fab Fragment, Light Chain Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Homo Sapiens Expression_system_common: Human Expression_system_taxid: 9606
symmetry	Space Group: P 1	R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma 1.000 1.000 1.000 90.00 90.00 90.00
method	Electron Microscopy	resolution	13.70 Å
ligand	FUL, NDG, PCA	enzyme
Gene Ontology	Chain Function Process Component A, C, B
Primary reference	Neutralization of West Nile virus by cross-linking of its surface proteins with Fab fragments of the human monoclonal antibody CR4354., Kaufmann B, Vogt MR, Goudsmit J, Holdaway HA, Aksyuk AA, Chipman PR, Kuhn RJ, Diamond MS, Rossmann MG, Proc Natl Acad Sci U S A. 2010 Nov 2;107(44):18950-5. Epub 2010 Oct 18. PMID:20956322

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (332 Kb) [Save to disk] Biological Unit Coordinates (3iyw.pdb1.gz) 19121 Kb LPC: Ligand-Protein Contacts for 3IYW CSU: Contacts of Structural Units for 3IYW Retrieve 3IYW in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3IYW from S2C, [Save to disk]

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Visual 3D analysis of 3IYW

VIPERdb: visual, structural and computational analysis of 3IYW Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3IYW, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3iyw_L] [3iyw_H] [3iyw_K] [3iyw_M] [3iyw_B] [3iyw_C] [3iyw_A] [3iyw] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 3IYW: [IG_like] [IGv ] by SMART

Other resources with information on 3IYW

Community annotation for 3IYW at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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