4V7E Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome date
authors Barrio-Garcia, C., Armache, J.P., Jarasch, A., Anger, A.M., Villa, E., Becker, T., Bhushan, S., Jossinet, F., Habeck, M., Dindar, G., Franckenberg, S., Marquez, V., Mielke, T., Thomm, M., Berninghausen, O., Beatrix, B., Soeding, J., Westhof, E., Wilson, D.N., Beckmann, R.
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symmetry
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length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 5.50
note 4V7E supersedes 3J5Z, 3J60, 3J61, 3J62, 3IZ6, 3IZ7, 3IZ9, 3IZR, 3IZ5
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  • protein kinase activator act...


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    Primary referenceStructures of the Sec61 complex engaged in nascent peptide translocation or membrane insertion., Gogala M, Becker T, Beatrix B, Armache JP, Barrio-Garcia C, Berninghausen O, Beckmann R, Nature. 2014 Feb 6;506(7486):107-10. doi: 10.1038/nature12950. PMID:24499919
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1681 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 4V7E
  • Retrieve 4V7E in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4V7E from S2C, [Save to disk]
  • View 4V7E in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4V7E
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4v7e_CU] [4v7e_CG] [4v7e_Aa] [4v7e_Ci] [4v7e_CW] [4v7e_Ca] [4v7e_CQ] [4v7e_Ch] [4v7e_Bg] [4v7e_BC] [4v7e_BS] [4v7e_BF] [4v7e_BX] [4v7e_CT] [4v7e_Cp] [4v7e_Af] [4v7e_BZ] [4v7e_BO] [4v7e_BH] [4v7e_Be] [4v7e_CO] [4v7e_BL] [4v7e_Cj] [4v7e_Ce] [4v7e_BK] [4v7e_Cd] [4v7e_Cs] [4v7e_CN] [4v7e_BA] [4v7e_Cb] [4v7e_BJ] [4v7e_Cq] [4v7e_Cm] [4v7e_CS] [4v7e_BM] [4v7e_Cn] [4v7e_BV] [4v7e_CY] [4v7e_CE] [4v7e_CI] [4v7e_BW] [4v7e_BD] [4v7e_Cz] [4v7e_BU] [4v7e_Cv] [4v7e_CL] [4v7e_Cr] [4v7e_Cc] [4v7e_BR] [4v7e_CF] [4v7e_BI] [4v7e_Cu] [4v7e_Bf] [4v7e_Ae] [4v7e_Cf] [4v7e_Cg] [4v7e_BG] [4v7e_Ba] [4v7e_CP] [4v7e_Ck] [4v7e_CD] [4v7e_CV] [4v7e_Cl] [4v7e_CM] [4v7e_CH] [4v7e_BN] [4v7e_BY] [4v7e_CJ] [4v7e_BE] [4v7e_Bc] [4v7e_Co] [4v7e_CR] [4v7e_Bb] [4v7e_CZ] [4v7e_CB] [4v7e_CC] [4v7e] [4v7e_CX] [4v7e_Ct] [4v7e_Ac] [4v7e_BB] [4v7e_CK] [4v7e_CA] [4v7e_BT] [4v7e_Ab] [4v7e_BP] [4v7e_BQ] [4v7e_Bd] [4v7e_Ad]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4V7E: [KH] [KOW] [RL11] [Ribosomal_L14] [Ribosomal_L15e] [Ribosomal_L19e] [Ribosomal_L2] [Ribosomal_L2_C] [Ribosomal_L31e] [Ribosomal_L32e] [Ribosomal_L40e] [Ribosomal_S10] [Ribosomal_S13_N] [Ribosomal_S15] [Ribosomal_S19e] [Ribosomal_S27] [Ribosomal_S3Ae] [Ribosomal_S4] [Ribosomal_S6e] [S4] [TRASH] [UBQ] [WD40 ] by SMART
  • Other resources with information on 4V7E
  • Community annotation for 4V7E at PDBWiki (http://pdbwiki.org)

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