3IZQ Ribosomal Protein,Hydrolase date Nov 30, 2010
title Structure Of The Dom34-Hbs1-Gdpnp Complex Bound To A Transla Ribosome
authors T.Becker, J.P.Armache, A.Jarasch, A.M.Anger, E.Villa, H.Sieber, B Motaal, T.Mielke, O.Berninghausen, R.Beckmann
compound source
Molecule: Protein Dom34
Chain
Synonym: Dom34p
Ec: 3.1.-.-
Engineered: Yes
 Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Brewer'S Yeast,Lager Beer Yeast,Yeast
Organism_taxid: 4932
Gene: Dom34, N2016, Ynl001w
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Pet21a

Molecule: Elongation Factor 1 Alpha-Like Protein
Chain: 1
Synonym: Hbs1p
Engineered: Yes
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Yeast
Organism_taxid: 4932
Gene: Hbs1, Ykr084c, Ykr404
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Pet28b
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
0.000 0.000 0.000 90.00 90.00 90.00
method Electron Microscopyresolution 9.50 Å
ligand
enzyme Hydrolase E.C.3.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
0
  • nuclease activity
  • endonuclease activity
  • endoribonuclease activity


    • 1


    Primary referenceStructure of the no-go mRNA decay complex Dom34-Hbs1 bound to a stalled 80S ribosome., Becker T, Armache JP, Jarasch A, Anger AM, Villa E, Sieber H, Motaal BA, Mielke T, Berninghausen O, Beckmann R, Nat Struct Mol Biol. 2011 Jun;18(6):715-20. Epub 2011 May 29. PMID:21623367
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (129 Kb) [Save to disk]
  • Biological Unit Coordinates (3izq.pdb1.gz) 122 Kb
  • CSU: Contacts of Structural Units for 3IZQ
  • Retrieve 3IZQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3IZQ from S2C, [Save to disk]
    • View 3IZQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3IZQ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3IZQ, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3izq_1] [3izq] [3izq_0]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3IZQ: [eRF1_1 ] by SMART
    • Other resources with information on 3IZQ
  • Community annotation for 3IZQ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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