4V6K Structural insights into cognate vs. near-cognate discrimination during decoding. date
authors Agirrezabala, X., Schreiner, E., Trabuco, L.G., Lei, J., Ortiz-Meoz, R.F., Schulten, K., Green, R., Frank, J.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 8.25
note 4V6K supersedes 3IZU, 3IZW
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Ontology
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    Primary referenceStructural insights into cognate versus near-cognate discrimination during decoding., Agirrezabala X, Schreiner E, Trabuco LG, Lei J, Ortiz-Meoz RF, Schulten K, Green R, Frank J, EMBO J. 2011 Mar 4. PMID:21378755
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1572 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 4V6K
  • Retrieve 4V6K in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4V6K from S2C, [Save to disk]
  • View 4V6K in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4V6K
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4v6k_AU] [4v6k_AE] [4v6k_AD] [4v6k_AA] [4v6k_Ac] [4v6k_BW] [4v6k_AH] [4v6k_BU] [4v6k_BA] [4v6k_AB] [4v6k_AJ] [4v6k_AY] [4v6k] [4v6k_AC] [4v6k_Ae] [4v6k_BR] [4v6k_BH] [4v6k_AT] [4v6k_AW] [4v6k_AK] [4v6k_BT] [4v6k_BC] [4v6k_BK] [4v6k_AL] [4v6k_Af] [4v6k_BB] [4v6k_BN] [4v6k_BX] [4v6k_AQ] [4v6k_BS] [4v6k_BJ] [4v6k_AI] [4v6k_AS] [4v6k_BF] [4v6k_AX] [4v6k_BY] [4v6k_Aa] [4v6k_BO] [4v6k_BI] [4v6k_BQ] [4v6k_AF] [4v6k_BP] [4v6k_BD] [4v6k_AM] [4v6k_BE] [4v6k_BL] [4v6k_BM] [4v6k_BG] [4v6k_Ad] [4v6k_Ab] [4v6k_AO] [4v6k_AG] [4v6k_BV] [4v6k_AN] [4v6k_AR] [4v6k_Ag] [4v6k_AP] [4v6k_AV] [4v6k_AZ]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4V6K: [KH] [KOW] [RL11] [Ribosomal_L14] [Ribosomal_L2] [Ribosomal_L2_C] [Ribosomal_S10] [Ribosomal_S15] [Ribosomal_S4] [S4 ] by SMART
  • Other resources with information on 4V6K
  • Community annotation for 4V6K at PDBWiki (http://pdbwiki.org)

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