3J0C Virus date Jun 22, 2011
title Models Of E1, E2 And Cp Of Venezuelan Equine Encephalitis Vi Strain Restrained By A Near Atomic Resolution Cryo-Em Map
authors R.Zhang, C.F.Hryc, Y.Cong, X.Liu, J.Jakana, R.Gorchakov, M.L.Baker S.C.Weaver, W.Chiu
compound source
Molecule: E1 Envelope Glycoprotein
Chain: A, D, G, J
Fragment: Full Length (Unp Residues 813-1254)
Synonym: Spike Glycoprotein E1
Organism_scientific: Venezuelan Equine Encephalitis Virus
Organism_common: Veev
Organism_taxid: 11037
Strain: Tc-83
Other_details: Purified From Infected Baby Hamster Kidney ( Cells;

Molecule: E2 Envelope Glycoprotein
Chain: B, E, H, K
Fragment: Full Length (Unp Residues 335-757)
Synonym: Spike Glycoprotein E2

Organism_scientific: Venezuelan Equine Encephalitis Virus
Organism_common: Veev
Organism_taxid: 11037
Strain: Tc-83
Other_details: Purified From Infected Baby Hamster Kidney ( Cells;

Molecule: Capsid Protein
Chain: C, F, I, L
Fragment: C-Terminal Protease Domain (Unp Residues 114-275)
Synonym: Coat Protein, C
Ec: 3.4.21.90

Organism_scientific: Venezuelan Equine Encephalitis Virus
Organism_common: Veev
Organism_taxid: 11037
Strain: Tc-83
Other_details: Purified From Infected Baby Hamster Kidney ( Cells
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 4.80 Å
ligand
enzyme Hydrolase E.C.3.4.21.90 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, J, D, G


F, C, I, L


K, E, B, H


Primary reference4.4 A cryo-EM structure of an enveloped alphavirus Venezuelan equine encephalitis virus., Zhang R, Hryc CF, Cong Y, Liu X, Jakana J, Gorchakov R, Baker ML, Weaver SC, Chiu W, EMBO J. 2011 Aug 9. doi: 10.1038/emboj.2011.261. PMID:21829169
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (557 Kb) [Save to disk]
  • Biological Unit Coordinates (3j0c.pdb1.gz) 32365 Kb
  • CSU: Contacts of Structural Units for 3J0C
  • Retrieve 3J0C in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3J0C from S2C, [Save to disk]
  • View 3J0C in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3J0C
  • VIPERdb: visual, structural and computational analysis of 3J0C
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3J0C, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3j0c] [3j0c_G] [3j0c_C] [3j0c_D] [3j0c_B] [3j0c_L] [3j0c_H] [3j0c_K] [3j0c_A] [3j0c_E] [3j0c_J] [3j0c_I] [3j0c_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3J0C
  • Community annotation for 3J0C at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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