3J1P Virus date Apr 09, 2012
title Atomic Model Of Rabbit Hemorrhagic Disease Virus
authors X.Wang, Y.Liu, F.Sun
compound source
Molecule: Major Capsid Protein Vp60
Chain: A, B, C
Fragment: Unp Residues 1766-2344
 Organism_scientific: Rabbit Hemorrhagic Disease Virus
Organism_common: Rhdv
Organism_taxid: 11976
Strain: Hyd
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 6.50 Å
Primary referenceAtomic model of rabbit hemorrhagic disease virus by cryo-electron microscopy and crystallography., Wang X, Xu F, Liu J, Gao B, Liu Y, Zhai Y, Ma J, Zhang K, Baker TS, Schulten K, Zheng D, Pang H, Sun F, PLoS Pathog. 2013 Jan;9(1):e1003132. doi: 10.1371/journal.ppat.1003132. Epub 2013, Jan 17. PMID:23341770
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (204 Kb) [Save to disk]
  • Biological Unit Coordinates (3j1p.pdb1.gz) 11624 Kb
  • CSU: Contacts of Structural Units for 3J1P
  • Retrieve 3J1P in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3J1P from S2C, [Save to disk]
    • View 3J1P in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3J1P
  • VIPERdb: visual, structural and computational analysis of 3J1P
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3J1P, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3j1p_B] [3j1p] [3j1p_C] [3j1p_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3J1P
  • Community annotation for 3J1P at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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