3J1Z Metal Transport date Jul 24, 2012
title Inward-Facing Conformation Of The Zinc Transporter Yiip Reve Cryo-Electron Microscopy
authors N.Coudray, S.Valvo, M.Hu, R.Lasala, C.Kim, M.Vink, M.Zhou, D.Provas M.Filizola, J.Tao, J.Fang, P.A.Penczek, I.Ubarretxena-Belandia, D.L.Stokes, Transcontinental Em Initiative For Membrane Prot Structure (Temimps)
compound source
Molecule: Cation Efflux Family Protein
Chain: P, Q
Synonym: Yiip, Ferrous-Iron Efflux Pump (Fief)
Engineered: Yes
Organism_scientific: Shewanella Oneidensis
Organism_taxid: 211586
Strain: Mr-1
Gene: So_4475
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 13.00 Å
Gene SO
Gene
Ontology
ChainFunctionProcessComponent
Q, P
  • ferrous iron transmembrane t...
  • zinc efflux active transmemb...


  • Primary referenceInward-facing conformation of the zinc transporter YiiP revealed by cryoelectron microscopy., Coudray N, Valvo S, Hu M, Lasala R, Kim C, Vink M, Zhou M, Provasi D, Filizola M, Tao J, Fang J, Penczek PA, Ubarretxena-Belandia I, Stokes DL, Proc Natl Acad Sci U S A. 2013 Jan 22. PMID:23341604
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (83 Kb) [Save to disk]
  • Biological Unit Coordinates (3j1z.pdb1.gz) 1365 Kb
  • CSU: Contacts of Structural Units for 3J1Z
  • Retrieve 3J1Z in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3J1Z from S2C, [Save to disk]
  • View 3J1Z in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3J1Z
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3J1Z, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3j1z_P] [3j1z_Q] [3j1z]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3J1Z
  • Community annotation for 3J1Z at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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