3J2Q Blood Clotting date Dec 11, 2012
title Model Of Membrane-Bound Factor Viii Organized In 2d Crystals
authors S.Stoilova-Mcphie, G.C.Lynch, S.Ludtke, B.M.Pettitt
compound source
Molecule: Coagulation Factor Viii Heavy Chain
Chain: A
Fragment: Unp Residues 20-764
Synonym: Antihemophilic Factor, Ahf, Procoagulant Component Viiia Heavy Chain, 92 Kda Isoform;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: F8, F8c
Expression_system: Cricetulus Griseus
Expression_system_common: Chinese Hamster
Expression_system_taxid: 10029
Expression_system_cell: Ovary

Molecule: Coagulation Factor Viii Light Chain
Chain: B
Fragment: Unp Residues 1668-2351
Synonym: Antihemophilic Factor, Ahf, Procoagulant Component Viiia Light Chain;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: F8, F8c
Expression_system: Cricetulus Griseus
Expression_system_common: Chinese Hamster
Expression_system_taxid: 10029
Expression_system_cell: Ovary
symmetry Space Group: P 1
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
81.000 71.000 100.000 67.00 60.00 65.00
method Electron Crystallographyresolution 15.00 Å
ligand BMA, CA, CU, MAN, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceDomain organization of membrane-bound factor VIII., Stoilova-McPhie S, Lynch GC, Ludtke S, Pettitt BM, Biopolymers. 2013 Jul;99(7):448-59. doi: 10.1002/bip.22199. PMID:23616213
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (185 Kb) [Save to disk]
  • Biological Unit Coordinates (3j2q.pdb1.gz) 176 Kb
  • LPC: Ligand-Protein Contacts for 3J2Q
  • CSU: Contacts of Structural Units for 3J2Q
  • Structure Factors (3 Kb)
  • Retrieve 3J2Q in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3J2Q from S2C, [Save to disk]
  • View 3J2Q in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3J2Q
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3J2Q, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3j2q_A] [3j2q_B] [3j2q]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3J2Q: [FA58C ] by SMART
  • Other resources with information on 3J2Q
  • Community annotation for 3J2Q at PDBWiki (http://pdbwiki.org)

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