4V6W
Structure of the D. melanogaster 80S ribosome
date
authors
Anger, A.M., Armache, J.P., Berninghausen, O., Habeck, M., Subklewe, M., Wilson, D.N., Beckmann, R.
compound
source
symmetry
R_factor
R_Free
crystal
cell
length a
length b
length c
angle alpha
angle beta
angle gamma
method
X-Ray Diffraction
resolution
6.00
note
4V6W supersedes
3J38
,
3J39
,
3J3C
,
3J3E
Gene
Ontology
Chain
Function
Process
Component
AA
cytosolic ribosome
AB
AC
cytosolic ribosome
AD
nuclease activity
endonuclease activity
cytosolic ribosome
AE
cytosolic ribosome
AF
cytosolic ribosome
AG
cytosolic ribosome
AH
AI
cytosolic ribosome
AJ
cytosolic ribosome
AK
AL
AM
AN
cytosolic ribosome
AO
cytosolic ribosome
AP
AQ
cytosolic ribosome
AR
cytosolic ribosome
AS
AT
cytosolic ribosome
AU
AV
cytosolic ribosome
AW
cytosolic ribosome
AX
cytosolic ribosome
AY
cytosolic ribosome
AZ
cytosolic ribosome
Aa
Ab
structural constituent of ri...
cytosolic ribosome
Ac
cytosolic small ribosomal su...
Ad
Ae
Af
Ag
Ah
Az
CA
cytosolic ribosome
CB
CC
cytosolic ribosome
CD
cytosolic ribosome
CE
cytosolic ribosome
CF
cytosolic ribosome
CG
cytosolic ribosome
CH
cytosolic ribosome
CI
cytosolic ribosome
CJ
cytosolic ribosome
CK
cytosolic ribosome
CL
cytosolic ribosome
CM
cytosolic ribosome
CN
CO
cytosolic ribosome
CP
CQ
cytosolic ribosome
CR
cytosolic ribosome
CS
CT
cytosolic ribosome
CU
cytosolic ribosome
CV
CW
cytosolic ribosome
CX
cytosolic ribosome
CY
cytosolic ribosome
CZ
Ca
cytosolic ribosome
Cb
Cc
cytosolic ribosome
Cd
cytosolic ribosome
Ce
Cf
cytosolic ribosome
Cg
Ch
cytosolic ribosome
Ci
cytosolic ribosome
Cj
Ck
cytosolic ribosome
Cl
Cm
Cn
Co
Cp
Cq
Cr
Cz
Primary reference
Structures of the human and Drosophila 80S ribosome., Anger AM, Armache JP, Berninghausen O, Habeck M, Subklewe M, Wilson DN, Beckmann R, Nature. 2013 May 2;497(7447):80-5. doi: 10.1038/nature12104. PMID:
23636399
Data retrieval
Asymmetric unit, PDB entry:
[header only]
[complete with coordinates]
(1677 Kb)
[Save to disk]
CSU:
Contacts of Structural Units
for 4V6W
Retrieve 4V6W in
mmCIF
format
[Save to disk]
SEQRES to COORDINATES
correlation for
4V6W
from
S2C
,
[Save to disk]
View 4V6W in 3D
Proteopedia
, because life has more than 2D.
On
Jmol
, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
On
FirstGlance
, an excellent tool for a guided tour on the structure components, by
E. Martz
.
Visual 3D analysis of 4V6W
Ramachandran
plot from
PDBSum
Structure-derived information
Dipole
moment, from
Dipole Server
at Weizmann Institute
Sequence-derived information
View one-letter amino acid or nucleotide sequence for each chain:
[4v6w_Cc]
[4v6w_Ci]
[4v6w_AL]
[4v6w_AQ]
[4v6w]
[4v6w_AR]
[4v6w_CT]
[4v6w_Ab]
[4v6w_Cn]
[4v6w_CB]
[4v6w_AW]
[4v6w_Cz]
[4v6w_CH]
[4v6w_AN]
[4v6w_Cf]
[4v6w_CN]
[4v6w_AX]
[4v6w_CF]
[4v6w_Ad]
[4v6w_Cd]
[4v6w_B2]
[4v6w_CO]
[4v6w_AZ]
[4v6w_A8]
[4v6w_AV]
[4v6w_AJ]
[4v6w_CM]
[4v6w_AT]
[4v6w_CR]
[4v6w_CY]
[4v6w_CX]
[4v6w_Cl]
[4v6w_CW]
[4v6w_Ah]
[4v6w_CE]
[4v6w_AK]
[4v6w_CG]
[4v6w_AM]
[4v6w_AY]
[4v6w_AI]
[4v6w_Cb]
[4v6w_Ch]
[4v6w_CP]
[4v6w_CU]
[4v6w_Az]
[4v6w_A5]
[4v6w_CV]
[4v6w_Ce]
[4v6w_Aa]
[4v6w_Co]
[4v6w_AP]
[4v6w_CK]
[4v6w_CZ]
[4v6w_Cm]
[4v6w_AO]
[4v6w_Ag]
[4v6w_AS]
[4v6w_CI]
[4v6w_CL]
[4v6w_CA]
[4v6w_AD]
[4v6w_Cj]
[4v6w_CQ]
[4v6w_AH]
[4v6w_Cq]
[4v6w_AG]
[4v6w_A7]
[4v6w_Ae]
[4v6w_CJ]
[4v6w_AF]
[4v6w_CS]
[4v6w_Cg]
[4v6w_Ac]
[4v6w_A9]
[4v6w_Af]
[4v6w_CC]
[4v6w_AU]
[4v6w_BC]
[4v6w_AE]
[4v6w_AB]
[4v6w_AC]
[4v6w_AA]
[4v6w_CD]
[4v6w_Cr]
[4v6w_Ck]
[4v6w_Ca]
[4v6w_Cp]
SWISS-PROT
database:
Domain
organization of by
SWISSPFAM
Domains
found in 4V6W:
[EFG_C]
[EFG_IV]
[HABP4_PAI-RBP1]
[KH]
[KOW]
[RL11]
[Ribosomal_L14]
[Ribosomal_L15e]
[Ribosomal_L19e]
[Ribosomal_L2]
[Ribosomal_L2_C]
[Ribosomal_L31e]
[Ribosomal_L32e]
[Ribosomal_L40e]
[Ribosomal_S10]
[Ribosomal_S13_N]
[Ribosomal_S15]
[Ribosomal_S19e]
[Ribosomal_S27]
[Ribosomal_S3Ae]
[Ribosomal_S4]
[Ribosomal_S6e]
[S4]
[TRASH]
[WD40 ]
by
SMART
Other resources with information on 4V6W
Community annotation for
4V6W
at
PDBWiki
(http://pdbwiki.org)
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