3JAE Signaling Protein date Jun 08, 2015
title Structure Of Alpha-1 Glycine Receptor By Single Particle Ele Cryo-Microscopy, Glycine-Bound State
authors J.Du, W.Lu, S.P.Wu, Y.F.Cheng, E.Gouaux
compound source
Molecule: Glycine Receptor Subunit Alphaz1
Chain: A, B, C, D, E
Synonym: Alpha1 Glycine Receptor
Engineered: Yes
Organism_scientific: Danio Rerio
Organism_common: Zebra Fish
Organism_taxid: 7955
Gene: Glra1
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.90 Å
ligand NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, E, B


Primary referenceGlycine receptor mechanism elucidated by electron cryo-microscopy., Du J, Lu W, Wu S, Cheng Y, Gouaux E, Nature. 2015 Sep 7. doi: 10.1038/nature14853. PMID:26344198
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (241 Kb) [Save to disk]
  • Biological Unit Coordinates (3jae.pdb1.gz) 235 Kb
  • LPC: Ligand-Protein Contacts for 3JAE
  • CSU: Contacts of Structural Units for 3JAE
  • Retrieve 3JAE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3JAE from S2C, [Save to disk]
  • View 3JAE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3JAE
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3jae_A] [3jae_C] [3jae_E] [3jae_D] [3jae_B] [3jae]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3JAE
  • Community annotation for 3JAE at PDBWiki (http://pdbwiki.org)

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