3JPV	Transferase Transferase Inhibitor	date	Sep 04, 2009
title	Crystal Structure Of Human Proto-Oncogene Serine Threonine K (Pim1) In Complex With A Consensus Peptide And A Pyrrolo[2, A]Carbazole Ligand
authors	P.Filippakopoulos, A.N.Bullock, O.Fedorov, R.Akue-Gedu, E.Rossig S.Azzaro, J.Bain, P.Cohen, M.Prudhomme, P.Moreau, F.Amizon, F.Von C.H.Arrowsmith, J.Weigelt, A.Edwards, C.Bountra, S.Knapp, Struct Genomics Consortium (Sgc)
compound		source
Molecule: Proto-Oncogene Serinethreonine-Protein Kinase Pi Chain: A Ec: 2.7.11.1 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Pim1 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3)-R3 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pnic28-Bsa4
Molecule: Peptide (Pimtide) Arkrrrhpsgppta Chain: B Engineered: Yes		Synthetic: Yes
symmetry	Space Group: P 65	R_factor 0.173 R_Free 0.226
crystal cell	length a length b length c angle alpha angle beta angle gamma 97.821 97.821 80.743 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.35 Å
ligand	1DR BindingDB	enzyme	Transferase E.C.2.7.11.1 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Synthesis, kinase inhibitory potencies, and in vitro antiproliferative evaluation of new Pim kinase inhibitors., Akue-Gedu R, Rossignol E, Azzaro S, Knapp S, Filippakopoulos P, Bullock AN, Bain J, Cohen P, Prudhomme M, Anizon F, Moreau P, J Med Chem. 2009 Oct 22;52(20):6369-81. PMID:19788246

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (56 Kb) [Save to disk] Biological Unit Coordinates (3jpv.pdb1.gz) 50 Kb LPC: Ligand-Protein Contacts for 3JPV CSU: Contacts of Structural Units for 3JPV Structure Factors (286 Kb) Retrieve 3JPV in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3JPV from S2C, [Save to disk] Re-refined 3jpv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3JPV in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3JPV

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3JPV, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3jpv_B] [3jpv_A] [3jpv] SWISS-PROT database: [P11309] Domain organization of [PIM1_HUMAN] by SWISSPFAM Domain found in 3JPV: [S_TKc ] by SMART

Other resources with information on 3JPV

Community annotation for 3JPV at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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