3JQL Hydrolase date Sep 07, 2009
title Crystal Structure Of The Complex Formed Between Phospholipas Hexapeptide Fragment Of Amyloid Beta Peptide, Lys-Leu-Val-P At 1.2 A Resolution
authors Z.Mirza, G.Vikram, N.Singh, M.Sinha, S.Sharma, A.Srinivasan, P.Kau T.P.Singh
compound source
Molecule: Acidic Phospholipase A2 3 (Fragment)
Chain: A
 Organism_scientific: Naja Sagittifera
Organism_taxid: 195058

Molecule: Amyloid Beta Peptide
Chain: B
Engineered: Yes
Synthetic: Yes
Other_details: Peptide Synthesis
symmetry Space Group: P 41
R_factor 0.181 R_Free 0.193
crystal
cell
length a length b length c angle alpha angle beta angle gamma
42.023 42.023 64.146 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.20 Å
ligand CA enzyme
note 3JQL is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (48 Kb) [Save to disk]
  • Biological Unit Coordinates (3jql.pdb1.gz) 43 Kb
  • LPC: Ligand-Protein Contacts for 3JQL
  • CSU: Contacts of Structural Units for 3JQL
  • Structure Factors (221 Kb)
  • Retrieve 3JQL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3JQL from S2C, [Save to disk]
  • Re-refined 3jql structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3JQL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3JQL
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3JQL, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3jql_A] [3jql_B] [3jql]
  • SWISS-PROT database: [P60045]
  • Domain organization of [PA23_NAJSG] by SWISSPFAM
  • Domain found in 3JQL: [PA2c ] by SMART
    • Other resources with information on 3JQL
  • Community annotation for 3JQL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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