3JVD Transcription Regulator date Sep 16, 2009
title Crystal Structure Of Putative Transcription Regulation Repre Family) From Corynebacterium Glutamicum
authors Y.Patskovsky, U.Ramagopal, R.Toro, R.Foti, J.Freeman, J.Do, J.M.Sa S.K.Burley, S.C.Almo, New York Sgx Research Center For Struct Genomics (Nysgxrc)
compound source
Molecule: Transcriptional Regulators
Chain: A, B
Synonym: Laci Family Protein
Engineered: Yes
 Organism_scientific: Corynebacterium Glutamicum
Organism_taxid: 1718
Atcc: 13032
Gene: Cgl2044, Ycza
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Modified Pet26
symmetry Space Group: P 65 2 2
R_factor 0.224 R_Free 0.284
crystal
cell
length a length b length c angle alpha angle beta angle gamma
91.970 91.970 285.453 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.30 Å
ligand GOL, SO4 enzyme
note 3JVD is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (87 Kb) [Save to disk]
  • Biological Unit Coordinates (3jvd.pdb1.gz) 81 Kb
  • LPC: Ligand-Protein Contacts for 3JVD
  • CSU: Contacts of Structural Units for 3JVD
  • Structure Factors (383 Kb)
  • Retrieve 3JVD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3JVD from S2C, [Save to disk]
  • Re-refined 3jvd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3JVD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3JVD
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3JVD, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3jvd_A] [3jvd_B] [3jvd]
  • SWISS-PROT database: [Q6M413]
  • Domain organization of [Q6M413_CORGL] by SWISSPFAM
  • Domain found in 3JVD: [HTH_LACI ] by SMART
    • Other resources with information on 3JVD
  • Community annotation for 3JVD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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