3JVH	Lyase	date	Sep 16, 2009
title	Crystal Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosp Synthase From Burkholderia Pseudomallei With Fol Fragment 8
authors	Seattle Structural Genomics Center For Infectious Disease (S
compound		source
Molecule: 2-C-Methyl-D-Erythritol 2,4-Cyclodiphosphate Synt Chain: A, B, C Synonym: Mecps, Mecdp-Synthase Ec: 4.6.1.12 Engineered: Yes		Organism_scientific: Burkholderia Pseudomallei Organism_common: Pseudomonas Pseudomallei Organism_taxid: 28450 Strain: 1710b Gene: Ispf, Mecs, Bpsl2098 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Ava0421
symmetry	Space Group: C 1 2 1	R_factor 0.167 R_Free 0.195
crystal cell	length a length b length c angle alpha angle beta angle gamma 117.120 67.650 60.000 90.00 96.32 90.00
method	X-Ray Diffraction	resolution	1.69 Å
ligand	GOL, HHV, ZN	enzyme	Lyase E.C.4.6.1.12 BRENDA
Gene Ontology	Chain Function Process Component A, C, B
Primary reference	Cytidine derivatives as IspF inhibitors of Burkolderia pseudomallei., Zhang Z, Jakkaraju S, Blain J, Gogol K, Zhao L, Hartley RC, Karlsson CA, Staker BL, Edwards TE, Stewart LJ, Myler PJ, Clare M, Begley DW, Horn JR, Hagen TJ, Bioorg Med Chem Lett. 2013 Dec 15;23(24):6860-3. doi: 10.1016/j.bmcl.2013.09.101., Epub 2013 Oct 8. PMID:24157367

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (84 Kb) [Save to disk] Biological Unit Coordinates (3jvh.pdb1.gz) 76 Kb LPC: Ligand-Protein Contacts for 3JVH CSU: Contacts of Structural Units for 3JVH Structure Factors (756 Kb) Retrieve 3JVH in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3JVH from S2C, [Save to disk] Re-refined 3jvh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3JVH in 3D

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Visual 3D analysis of 3JVH

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3JVH, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3jvh_A] [3jvh_B] [3jvh_C] [3jvh] SWISS-PROT database: [Q63T71] Domain organization of [ISPF_BURPS] by SWISSPFAM

Other resources with information on 3JVH

Community annotation for 3JVH at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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