3JW1 Hydrolase date Sep 17, 2009
title Crystal Structure Of Bovine Pancreatic Ribonuclease Complexe Uridine-5'-Monophosphate At 1.60 A Resolution
authors S.B.Larson, J.S.Day, C.Nguyen, R.Cudney, A.Mcpherson, Center For Throughput Structural Biology (Chtsb)
compound source
Molecule: Ribonuclease Pancreatic
Chain: A, B
Synonym: Rnase 1, Rnase A
Ec: 3.1.27.5
Organism_scientific: Bos Taurus
Organism_common: Bovine,Cow,Domestic Cattle,Domestic Cow
Organism_taxid: 9913
symmetry Space Group: P 1 21 1
R_factor 0.197 R_Free 0.253
crystal
cell
length a length b length c angle alpha angle beta angle gamma
30.730 74.850 50.520 90.00 107.80 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand U5P enzyme Hydrolase E.C.3.1.27.5 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • ribonuclease A activity


  • Primary referenceStructure of bovine pancreatic ribonuclease complexed with uridine 5'-monophosphate at 1.60 A resolution., Larson SB, Day JS, Nguyen C, Cudney R, McPherson A, Acta Crystallogr Sect F Struct Biol Cryst Commun. 2010 Feb 1;66(Pt, 2):113-20. Epub 2010 Jan 26. PMID:20124705
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (85 Kb) [Save to disk]
  • Biological Unit Coordinates (3jw1.pdb1.gz) 41 Kb
  • Biological Unit Coordinates (3jw1.pdb2.gz) 40 Kb
  • LPC: Ligand-Protein Contacts for 3JW1
  • CSU: Contacts of Structural Units for 3JW1
  • Structure Factors (330 Kb)
  • Retrieve 3JW1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3JW1 from S2C, [Save to disk]
  • Re-refined 3jw1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3JW1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3JW1
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3JW1, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3jw1_B] [3jw1] [3jw1_A]
  • SWISS-PROT database: [P61823]
  • Domain organization of [RNAS1_BOVIN] by SWISSPFAM
  • Domain found in 3JW1: [RNAse_Pc ] by SMART
  • Other resources with information on 3JW1
  • Community annotation for 3JW1 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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