3JWR Hydrolase date Sep 18, 2009
title Crystal Structure Of Chimeric Pde5pde6 Catalytic Domain Com With 3-Isobutyl-1-Methylxanthine (Ibmx) And Pde6 Gamma-Subu Inhibitory Peptide 70-87.
authors B.Barren, L.Gakhar, H.Muradov, K.K.Boyd, S.Ramaswamy, N.O.Artemye
compound source
Molecule: Cgmp-Specific 3',5'-Cyclic Phosphodiesterase Cata Domain, Cone Cgmp-Specific 3',5'-Cyclic Phosphodiesterase S Alpha Chimera;
Chain: A, B
Synonym: Cgmp-Binding Cgmp-Specific Phosphodiesterase, Cgb- Phosphodiesterase 6c;
Ec: 3.1.4.35
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Retinal Rod Rhodopsin-Sensitive Cgmp 3',5'-Cyclic Phosphodiesterase Subunit Gamma;
Chain: C, D
Fragment: Sequence Database Residues 70-87
Synonym: Gmp-Pde Gamma
Ec: 3.1.4.17
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Other_details: This Sequence Occurs Naturally In Humans.
symmetry Space Group: P 21 21 21
R_factor 0.212 R_Free 0.280
crystal
cell
length a length b length c angle alpha angle beta angle gamma
47.257 125.651 153.854 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.99 Å
ligand IBM, MG, ZN BindingDB enzyme Hydrolase E.C.3.1.4.35 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


D, C


Primary referenceStructural basis of phosphodiesterase 6 inhibition by the C-terminal region of the gamma-subunit., Barren B, Gakhar L, Muradov H, Boyd KK, Ramaswamy S, Artemyev NO, EMBO J. 2009 Oct 1. PMID:19798052
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (120 Kb) [Save to disk]
  • Biological Unit Coordinates (3jwr.pdb1.gz) 58 Kb
  • Biological Unit Coordinates (3jwr.pdb2.gz) 59 Kb
  • LPC: Ligand-Protein Contacts for 3JWR
  • CSU: Contacts of Structural Units for 3JWR
  • Structure Factors (151 Kb)
  • Retrieve 3JWR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3JWR from S2C, [Save to disk]
  • Re-refined 3jwr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3JWR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3JWR
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3JWR, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3jwr] [3jwr_A] [3jwr_D] [3jwr_B] [3jwr_C]
  • SWISS-PROT database: [P18545] [O76074]
  • Domain organization of [CNRG_HUMAN] [PDE5A_HUMAN] by SWISSPFAM
  • Domain found in 3JWR: [HDc ] by SMART
  • Other resources with information on 3JWR
  • Community annotation for 3JWR at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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