3JXA Cell Adhesion date Sep 18, 2009
title Immunoglobulin Domains 1-4 Of Mouse Cntn4
authors S.Bouyain
compound source
Molecule: Contactin 4
Chain: A, B
Fragment: Ig 1-4 Fragment (Unp Residues 25-404)
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Cntn4
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Psghp1
symmetry Space Group: C 1 2 1
R_factor 0.197 R_Free 0.252
crystal
cell
length a length b length c angle alpha angle beta angle gamma
281.728 40.431 95.076 90.00 103.32 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceThe protein tyrosine phosphatases PTPRZ and PTPRG bind to distinct members of the contactin family of neural recognition molecules., Bouyain S, Watkins DJ, Proc Natl Acad Sci U S A. 2010 Feb 9;107(6):2443-8. Epub 2010 Jan 21. PMID:20133774
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (264 Kb) [Save to disk]
  • Biological Unit Coordinates (3jxa.pdb1.gz) 130 Kb
  • Biological Unit Coordinates (3jxa.pdb2.gz) 129 Kb
  • LPC: Ligand-Protein Contacts for 3JXA
  • CSU: Contacts of Structural Units for 3JXA
  • Structure Factors (446 Kb)
  • Retrieve 3JXA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3JXA from S2C, [Save to disk]
  • Re-refined 3jxa structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3JXA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3JXA
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3JXA, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3jxa_B] [3jxa_A] [3jxa]
  • SWISS-PROT database: [Q14BL8]
  • Domain organization of [Q14BL8_MOUSE] by SWISSPFAM
  • Domains found in 3JXA: [IG_like] [IGc2 ] by SMART
  • Other resources with information on 3JXA
  • Community annotation for 3JXA at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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